PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Z8T04
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 741aa    MW: 83433.2 Da    PI: 6.1239
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Z8T04genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.22.3e-1123687391374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+av+++d + a+++L+++++++sp gd  qRla++f+ +L+arla+++s++yk l +++ts    +++l+a++l+  ++P+ k+s+++ 
  Aradu.Z8T04 368 LRTLLVLCAQAVAADDSKSAHEFLKQIKQHSSPFGDGSQRLAHMFADGLEARLAGTGSQIYKGLICKRTS---AADVLKAYHLYLAACPFRKISNFMS 462
                  5789*****************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N +I  + + + rvH+iDf+i +G+QWp+++q L+ R++gpp+lRiTg++ p++g   +e++ etg+rLa +Ae+++vpfe+n+ +ak++e+++leeL
  Aradu.Z8T04 463 NITIRTSSADSMRVHVIDFGILYGFQWPTFIQRLSWRSGGPPKLRITGIDFPQPGfrPAERIVETGRRLAAYAETFNVPFEYNA-IAKKWETIQLEEL 559
                  ******************************************************9*****************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++++E ++V + ++ ++lldesv +es+r+++L+l+++++P+++++   +   n++ F++rf eal +ys+lfd+le+ +pre+ er+ +E+e++gr
  Aradu.Z8T04 560 KIDRDEYVVVTCFYRGKNLLDESVVVESPRNKFLNLIRKINPDIFIHGIINGAFNAPFFVTRFREALFHYSSLFDMLETIVPREDWERMLIEKEIFGR 657
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e+ nv+aceg er+er et+++W+ r+ +aGF++ p++ k    a   +r    + + ++e+ ++lv+gWk+r ++++S+W+
  Aradu.Z8T04 658 EALNVIACEGCERVERPETYKQWQVRILRAGFTQQPFDPKLIGMAMDKVRSGFHKDFLIDEDGQWLVQGWKGRIIYALSCWK 739
                  ***************************************99988877777655566*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.789342719IPR005202Transcription factor GRAS
PfamPF035147.9E-110368739IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MIMDPHLHGF GGSTKEFRLE NQSLPIVQNQ RFENGLFDQS REFGYLQSNL LPPANNTHSS  60
SILTNDEPSP EDCDFSDAIL GYINQILMEE DMEDKTCMLQ DSLDLQVAEK SLYEVIGEKY  120
PSQPLGINPN DGEGVNDLFE NYGSDLVNDG DLRSIVMSSS FLRNSEEVHR QNFQGNSISQ  180
SSHSSSNSVI SSLEGPVESP NSILQVPDMS SESQSILQFQ KGVEEASKFL PSGNGLFSNF  240
SAAKLSSPLE PKLGTNALSV KVEKDDGESF LAGSKGRKHS DREEGDDEEN RSSKQAAVYL  300
EPTLRSDMID IFLLHSAGDG KQHYMARRDA LQNKNTDKML PRNGKSKASK TGKGRGKKQN  360
GRKEVVDLRT LLVLCAQAVA ADDSKSAHEF LKQIKQHSSP FGDGSQRLAH MFADGLEARL  420
AGTGSQIYKG LICKRTSAAD VLKAYHLYLA ACPFRKISNF MSNITIRTSS ADSMRVHVID  480
FGILYGFQWP TFIQRLSWRS GGPPKLRITG IDFPQPGFRP AERIVETGRR LAAYAETFNV  540
PFEYNAIAKK WETIQLEELK IDRDEYVVVT CFYRGKNLLD ESVVVESPRN KFLNLIRKIN  600
PDIFIHGIIN GAFNAPFFVT RFREALFHYS SLFDMLETIV PREDWERMLI EKEIFGREAL  660
NVIACEGCER VERPETYKQW QVRILRAGFT QQPFDPKLIG MAMDKVRSGF HKDFLIDEDG  720
QWLVQGWKGR IIYALSCWKP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-4337574026380Protein SCARECROW
5b3h_A5e-4337574025379Protein SCARECROW
5b3h_D5e-4337574025379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Z8T04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015960728.10.0scarecrow-like protein 9
RefseqXP_015960729.10.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A445DGG30.0A0A445DGG3_ARAHY; Uncharacterized protein
STRINGGLYMA18G39920.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein