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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.Z5BX3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 383aa MW: 41940.1 Da PI: 5.9318 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.7 | 1.2e-33 | 219 | 277 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s++prsYYrCt++gC vkk+vers++dp++v++tYeg+H+h+ Aradu.Z5BX3 219 LDDGYRWRKYGQKAVKNSPYPRSYYRCTTSGCGVKKRVERSSDDPSIVVTTYEGQHTHP 277 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-35 | 204 | 279 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-30 | 211 | 279 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.143 | 214 | 279 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-40 | 219 | 278 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-28 | 220 | 277 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MEEGKREKKK KEEEASTTTA TTITMANSVA FSDEIPITNT NTINTSYPFS SIFDMMPLPL 60 LPSYDHKTSA NGFIDLLALH DYTPSLFDCF PTTTTAAEAT PQQISSSQQQ QQALPSPASS 120 NVPDCSEVLN TPASPNSSSI SSSSNEGGAG VGSNNNNAEE HNGGKVVADD EHEAEDEEAD 180 GSKENQDKTK KQLKAKKKNQ KKQREPRFAF MTKSEVDHLD DGYRWRKYGQ KAVKNSPYPR 240 SYYRCTTSGC GVKKRVERSS DDPSIVVTTY EGQHTHPCPA TSRAALAFMH EPSFATIGSS 300 SPHFLLPHQQ HFQQPPPPPS LYNSATTTNP TPPTNASSFG TFVLQDGAFA AASRLNMDQA 360 FLRDHGLLQD IVPSQIRKED NIE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-29 | 212 | 280 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-29 | 212 | 280 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 11 | REKKKKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.Z5BX3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015936896.1 | 0.0 | probable WRKY transcription factor 48 | ||||
TrEMBL | A0A445AWC5 | 0.0 | A0A445AWC5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA15G14860.2 | 1e-93 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1002 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49520.1 | 5e-52 | WRKY DNA-binding protein 48 |