PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

HD-ZIP

Protein Properties

Length: 167aa MW: 19729.3 Da PI: 4.617

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.Z3DCJ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.6e-19	19	68	8	57
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +eq++ Le F +++++ e++ +LA +lgL+ rqV vWFqNrRa++k+ Aradu.Z3DCJ 19 AAEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKN 68 679*********************************************95 PP
2	HD-ZIP_I/II	110.2	1.4e-35	20	105	8	93
HD-ZIP_I/II 8 keqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lkra+++ +++rLe+ev +L+e+l++ Aradu.Z3DCJ 20 AEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKRAHETTLLDKCRLETEVLKLNEQLSN 105 79********************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.7E-13	10	73	IPR001356	Homeobox domain
Pfam	PF00046	4.9E-16	19	68	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.63E-16	20	77	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.9E-20	20	76	IPR009057	Homeodomain-like
CDD	cd00086	1.13E-13	21	70	No hit	No description
PROSITE profile	PS50071	15.256	21	69	IPR001356	Homeobox domain
PRINTS	PR00031	1.5E-5	40	49	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	44	67	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.5E-5	49	65	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MNQRSMDEQM MLISQLYPAA EQVNLLEMNF GNEHKLESER KDKLALELGL DPRQVAVWFQ 60 NRRARWKNKK LEEEYSNLKR AHETTLLDKC RLETEVLKLN EQLSNAKEEI QRLQDMVPSN 120 SSSSQSQSQS QSMEIMDPPF LGDYVFCVPE THYINGMEWV DPYENIW

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.Z3DCJ

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015964054.1	1e-114	homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	2e-52	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A151TI40	1e-66	A0A151TI40_CAJCA; Homeobox-leucine zipper protein ATHB-40 (Fragment)
STRING	GLYMA01G38390.1	8e-66	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-53	homeobox protein 40

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]