PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.YY1QV

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Dof

Protein Properties

Length: 438aa MW: 48293.9 Da PI: 8.579

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.YY1QV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.7e-39	129	188	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ek+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ Aradu.YY1QV 129 PEKILQCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHL 188 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	120	186	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.7E-32	131	187	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.435	133	187	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	135	171	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
KNFTLCKFAS QKHHHSSNIK HNYKRLMSGA GNMSDNKDPG IMLFGMKIPL PEFQIPASSQ 60 MGCQIQANFA AMNSCSNLKK TEVETQSAQN SEQEKNTCGS SYSKQESKNT EEGNEESSNT 120 DQERSFKKPE KILQCPRCNS LETKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA 180 GRRKNKHLAS QFRHIIVSEG TPAARLEPRE DSSGNNGSVL KFGPDVPLCE SMESMLSLRD 240 QKPNVDAASS ANSYFQNESL EQKCYSIPQF SWNPGWNNGG SPVPLTFPAT MRGVPTISPP 300 NIPLQFVPGS FWNRTQVWPS QTAAVSIGSN GCLSPSSSTT SNSCCSGNGS PTLGKHTRDS 360 NVFIDDEKSE ICVLVPKTLR IDGPNEASRK HLYESENGVS KKVEQKGQGK ERVLGVSQIL 420 EANPAAVSRV HAFQESTQ

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

KNFTLCKFAS QKHHHSSNIK HNYKRLMSGA GNMSDNKDPG IMLFGMKIPL PEFQIPASSQ  60
MGCQIQANFA AMNSCSNLKK TEVETQSAQN SEQEKNTCGS SYSKQESKNT EEGNEESSNT  120
DQERSFKKPE KILQCPRCNS LETKFCYFNN YNVNQPRHFC KNCQRYWTAG GTMRNVPVGA  180
GRRKNKHLAS QFRHIIVSEG TPAARLEPRE DSSGNNGSVL KFGPDVPLCE SMESMLSLRD  240
QKPNVDAASS ANSYFQNESL EQKCYSIPQF SWNPGWNNGG SPVPLTFPAT MRGVPTISPP  300
NIPLQFVPGS FWNRTQVWPS QTAAVSIGSN GCLSPSSSTT SNSCCSGNGS PTLGKHTRDS  360
NVFIDDEKSE ICVLVPKTLR IDGPNEASRK HLYESENGVS KKVEQKGQGK ERVLGVSQIL  420
EANPAAVSRV HAFQESTQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.YY1QV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015946926.1	0.0	cyclic dof factor 3
TrEMBL	A0A444X9S1	0.0	A0A444X9S1_ARAHY; Uncharacterized protein
STRING	GLYMA19G29610.2	1e-145	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-60	cycling DOF factor 2