PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YXW0Z
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NAC
Protein Properties Length: 342aa    MW: 38646.6 Da    PI: 8.6755
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YXW0ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.43.6e-33912311128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgy 82 
                  lp+G++F+P+d+e++ e+L +kv+++       ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + +
  Aradu.YXW0Z  91 LPAGVKFDPNDQEIL-EHLDAKVQSDVrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHtdqegsETR 184
                  799***********9.99******99856643322..22222333336**********.566677888******************744445555778 PP

          NAM  83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  W++tgk++++ +  g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Aradu.YXW0Z 185 WHKTGKTRPISV-AGSVKGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 231
                  ***********9.9999**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3686250IPR003441NAC domain
PROSITE profilePS5100532.81291250IPR003441NAC domain
PfamPF023656.5E-1592231IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
GPGLEKSKEM TWCNRSSVVE RGIEIINHPN LNIIAIPRNS NDNNNSVISV THHANTPPKP  60
TEIRAVTCPS CGHNIQIQQD QGGGIQDLPG LPAGVKFDPN DQEILEHLDA KVQSDVRKLH  120
PLIDEFIPTL EGENGICYTH PEKLPGVSKD GQVRHFFHRP SKAYTTGTRK RRKVHTDQEG  180
SETRWHKTGK TRPISVAGSV KGFKKILVLY TNYGRQKKPE KTNWVMHQYH LGSNEEEKDG  240
ELVVSKVFYQ TQPRQCANKD PYDERLLMTS QINSVNDISM HALPKNNAGF VDYYNPGFMN  300
MNYEQMNETT SPQLIPNMVV QGDSSSFIRL AMDANKPRLD RK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00165DAPTransfer from AT1G28470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.YXW0Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956418.10.0NAC domain-containing protein 10-like
RefseqXP_015956419.10.0NAC domain-containing protein 10-like
SwissprotF4HY611e-120NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A445DQX50.0A0A445DQX5_ARAHY; Uncharacterized protein
STRINGGLYMA13G24320.11e-167(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-115NAC domain containing protein 10