PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.YW6UW | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HSF | ||||||||
Protein Properties | Length: 310aa MW: 35099.6 Da PI: 6.9986 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 37 | 8.8e-12 | 254 | 302 | 1 | 48 |
HHHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT- CS HSF_DNA-bind 1 aFlkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhs 48 +Fl k+y++++d+ ++++isw+ ++nsf+v+++ ef + ++p+yFk++ Aradu.YW6UW 254 TFLLKTYDMVDDSFTNDIISWNsPTNNSFIVWNPPEFLRILVPTYFKKR 302 69********************8889*************999*****86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 9.0E-12 | 249 | 302 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 3.4E-9 | 251 | 301 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.6E-4 | 251 | 310 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-7 | 255 | 302 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MKLPKGYWWR TFQLAGPNRI QLLISFLDHD VLYYVRETPS YYFGVSENDD GHLPDVIYGL 60 VPGSFYHNYR ADLLLYDFKI GIAAIAIAQQ HGHNPLQDPR SADPQCFDLL GDQSQGALIL 120 TFPLIGIRGE IVRNGDVQEM LLLITSIVNA ICSGCPCSRK PVELHTTNNN NGHNLLKKAR 180 HDPHPFFAST GTVTVLFSNN TTRKDHSSPY FLSFTTTNHH SYLEYASFLS LHNFGIGSYS 240 SSRTEGGVRR GPATFLLKTY DMVDDSFTND IISWNSPTNN SFIVWNPPEF LRILVPTYFK 300 KREKEEEGGR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.YW6UW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-14 | HSF family protein |