PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YP97N
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 576aa    MW: 62659.4 Da    PI: 7.7493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YP97NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07265285526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ G C+ Gd+C +aHg
  Aradu.YP97N 265 PCPEFRK-GSCSKGDSCEYAHG 285
                  8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.1E-1619167IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.33E-1422145IPR020683Ankyrin repeat-containing domain
PfamPF127961.5E-758132IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00866393IPR002110Ankyrin repeat
PROSITE profilePS5029714.02663171IPR020683Ankyrin repeat-containing domain
CDDcd002042.91E-1265143No hitNo description
SMARTSM002480.02798130IPR002110Ankyrin repeat
PROSITE profilePS500889.72598133IPR002110Ankyrin repeat
SMARTSM003561.8E-5260286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648260287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4263287IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-5265285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4293323IPR000571Zinc finger, CCCH-type
SMARTSM0035645295318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MESKINNKTC QEGLHHRISA LLEFSASDDV TAFKEAIEKE GHNVGEIGLW YGRRIGTKEV  60
GYEERTPLMI AATFGSKNVL SYILKTGKAD VNKSCGSDSA TALHCAVDGA SPASAQIIKL  120
LLDSSANPNA VDARGNRCYD LAVSMPSIYN TRKKAVQSVL EGANNVYKKE ATSIGISSSL  180
NERGKVTAGT AEFPVSPRYK EFPVDHSLPD IKNGIYSTDE FRMYTFKVKP CSRAYSHDWT  240
ECPFAHPGEN AKRRDPRKYQ YSCVPCPEFR KGSCSKGDSC EYAHGIFECW LHPAQYRTRL  300
CKDEMACTRR VCFFAHKPEE LRPLYACSGS ALPSPTSYSP GGANSLDLCS SLSSPDGGGS  360
GSSPVWQTPQ AKLPKSRLNL ALSARDVNLD IQSIGLESRR LMQKLMMEEM VSSALSPNSS  420
TWRNSLPTSP SFGSPVPSPT NIWGSASSYS PSPSKVIGSP AAYGLDLSGG GVSLRSPSEI  480
PSPSKNSIGM ESSPSTLFGW GSPDGKLDWS IRRDELNKMH KSNSFAFRST ANLVTTPELA  540
EDAIDELDVS WVSSLVKDSS SNNYSTMLTH EQFNVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.YP97N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025692094.10.0zinc finger CCCH domain-containing protein 66-like
TrEMBLA0A445EW030.0A0A445EW03_ARAHY; Uncharacterized protein
STRINGGLYMA14G37330.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2397633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-151C3H family protein