PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.YDH89
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 400aa    MW: 46474.7 Da    PI: 8.2891
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.YDH89genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-16152197147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+ +  gR++k+c++rw++ 
      Aradu.YDH89 152 RGHWRPSEDSKLKELVALHGPQNWNLIAQNLE-GRSGKSCRLRWFNQ 197
                      899*****************************.***********996 PP
2Myb_DNA-binding54.82.2e-17204247146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
      Aradu.YDH89 204 KNPFSEEEEERLMEAHRVYGKK-WAMIARLFP-GRTDNAIKNHWHV 247
                      689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.545147198IPR017930Myb domain
SMARTSM007173.3E-14151200IPR001005SANT/Myb domain
PfamPF002493.3E-16152197IPR001005SANT/Myb domain
SuperFamilySSF466894.69E-28152245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25153205IPR009057Homeodomain-like
CDDcd001671.52E-12155196No hitNo description
PROSITE profilePS5129426.385199253IPR017930Myb domain
SMARTSM007171.4E-14203251IPR001005SANT/Myb domain
PfamPF002494.0E-14204246IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-21206252IPR009057Homeodomain-like
CDDcd001673.68E-6215246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MPPPTSTISH HSPYSMGVFY TDMGSLSLRT LSSSTTLSSS QERSNYYAKE MHNHNNDNGR  60
GTTTSSLFPF HHQFMRDSRS RNFQEHPCNN KDSDYDSRED GNEKFHNHEE AAAAAATNEF  120
NDDEENPNEE KYCMMSSGKE VNNSEKSKVC ARGHWRPSED SKLKELVALH GPQNWNLIAQ  180
NLEGRSGKSC RLRWFNQLDP RIKKNPFSEE EEERLMEAHR VYGKKWAMIA RLFPGRTDNA  240
IKNHWHVIMA RNYREQKSFT SRTNRKIRRY NTNNRQSLLF SRNNITTSTT SGYYGGQFIN  300
GSATITHMAT ACWRQQQDNN EEDPNGFYNQ QQFPFDYCFF SADIIGIILM TMVMNIIIFV  360
ILIPNNISIK FKCQKTTTFT VTHQVPLQQL QQHPIYENEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-321522517106B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.YDH89
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015965590.20.0transcription factor MYB108-like
TrEMBLA0A444Z4M20.0A0A444Z4M2_ARAHY; Uncharacterized protein
STRINGXP_007157609.11e-80(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-59myb domain protein 105