PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.Y4VR1
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 443aa    MW: 51060.7 Da    PI: 7.7326
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.Y4VR1genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.63.5e-1747133191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   +ei+++  +Cs+egk +++ +    +++t++++  +C  ++ ++  k  g w ++k++l+H+H+++p
  Aradu.Y4VR1  47 KFYRNYAKVAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKTKISL---TEKTNPTSGLNCPTRIYIHTLKdVGAWIISKVVLDHSHPCCP 133
                  6****************98887..8889**************99887...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-1447133IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.827300336IPR007527Zinc finger, SWIM-type
SMARTSM005750.0016311338IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MSDSQLNQGE VDYEFESNEV PESLSVVDDQ FIPKVGMTFT TLEDAGKFYR NYAKVAGFST  60
RVRSTNRKGN EIKNQLITCS REGKWKTKIS LTEKTNPTSG LNCPTRIYIH TLKDVGAWII  120
SKVVLDHSHP CCPSKAEMLK QHRELSMSIR RTIENNEEAG IRPNLYEDRH IWVPIYLNHH  180
FWAGMRSTQR SESMHSFFNK FITWNSSLIQ FVKQYDNCLE SREQAERESD AADFHTVIPC  240
ATKSSIEAQF QDVYTHQKFM EVQAQFRGKA NCITRLTNSA LGYSVYEVEE QVSSSIFNKF  300
VVTYNSVAAE VKCQCLLFES RGILCHHALS VLSFEQVSQV SLRYILERWS KKVKRRHTHI  360
KSSHDEPLME PRSKRFDQLV FCSQNICEFA SESEELTAFL HRAYDNVMAE MESLKAKRKG  420
TSSLSHEDAN LESVNKLQSP PRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.Y4VR1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-31far-red elongated hypocotyls 3