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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Aradu.Y1RGP |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family |
C2H2 |
| Protein Properties |
Length: 453aa MW: 50091.9 Da PI: 9.4748 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aradu.Y1RGP | genome | NCGR_PGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.7 | 9e-05 | 47 | 67 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cgk F r nL+ H r H
Aradu.Y1RGP 47 CETCGKGFQRDQNLQLHRRGH 67
*******************88 PP
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| 2 | zf-C2H2 | 12.9 | 0.00033 | 121 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC +C+k++ +s+ k H +t+
Aradu.Y1RGP 121 WKCDKCSKRYAVQSDWKAHSKTC 143
58*****************9998 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 453 aa
Download sequence Send
to blast |
MMILQNMDHG ELSNAFPHHQ NQNPTTTPPP SLKRKRNLPG NPGMFLCETC GKGFQRDQNL 60
QLHRRGHNLP WKLKQRTNKE PKKRVYVCPE KTCVHNHPSR ALGDLTGIKK HFCRKHGEKK 120
WKCDKCSKRY AVQSDWKAHS KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALAEETARVN 180
AASSINNSTL GANNNNNNII GYNNMMIGTS MAPHNNNNNN NMATQFASIC NKPIPFTEEA 240
TNNQTTTRGL SLWMDHHHHH RQEATMATNN NNYHLNWVFG SKISTNPSQD LSSNNTITST 300
TTTSLPILGS IVNVPSLYSS QHQPHQTCAS SSSANMSATA LLQKAAQVGA TSSDPSSFLG 360
ALGLKCSNGS DQGQDGNNNK FCGVYGSSLV LTSSSNNINR EAEKNELSQM HPSKRRHVMP 420
NEESGGGQTR DFLGVGGANH HLPPFINQSL DLI
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK120603 | 2e-32 | AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence. |
| GenBank | AK120723 | 2e-32 | AK120723.1 Oryza sativa Japonica Group cDNA clone:J023002I18, full insert sequence. |
| GenBank | AL662954 | 2e-32 | AL662954.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence. |
| GenBank | AP004188 | 2e-32 | AP004188.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1493_H11. |
| GenBank | AP014958 | 2e-32 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | AP014960 | 2e-32 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012612 | 2e-32 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
