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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Aradu.XPS1Y |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family |
CO-like |
Protein Properties |
Length: 399aa MW: 45440.5 Da PI: 5.5066 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Aradu.XPS1Y | genome | NCGR_PGC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 22.3 | 2.8e-07 | 14 | 57 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + + ++++fC ++ +lC+ C H+ H++v
Aradu.XPS1Y 14 ARACDSCLRVRARWFCAADDAFLCHGCDNLVHSAnqlasrHERV 57
578******99*********************657788888876 PP
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2 | CCT | 67 | 5e-23 | 341 | 384 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
Aradu.XPS1Y 341 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 384
9*****************************************87 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MKGSSSGALG AKTARACDSC LRVRARWFCA ADDAFLCHGC DNLVHSANQL ASRHERVRLQ 60 TSSSSAKITT TAWHSGFTRK ARTPRHHNKS TFLMQQQQDA EKEEEAVFNN YQGSVFLDPV 120 VPDLGSEDIY ESEEQILCRV PVFHPFDDDS VLCSVHNNEI MKKKKKKMKK MNNDDGEEEG 180 EGEVPCTFGL ENFSDLADVE NLLHIEDDST MIKVKDELQV TNNDDDCNLE SILDWNIDTS 240 DQSMMMAVVE HDQEEEENNN KVEIIKKEKF LRLNYEEVIS AWASQGSPWT TGNPPNFNFD 300 DCWPHYMGSS GGVDNNVAWC DGEEVRNMRW HQIGGVDDGG REARVSRYRE KRRTRLFAKK 360 IRYEVRKLNA EKRPRMKGRF VKRTSSSSSS FVEGAITTT
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 161 | 169 | KKKKKKMKK |
2 | 351 | 367 | RRTRLFAKKIRYEVRKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT098003 | 9e-41 | BT098003.1 Soybean clone JCVI-FLGm-26B17 unknown mRNA. |
GenBank | BT098569 | 9e-41 | BT098569.1 Soybean clone JCVI-FLGm-23A18 unknown mRNA. |
GenBank | HM068903 | 9e-41 | HM068903.1 Glycine max CONSTANS-like zinc finger protein (COL21) mRNA, complete cds. |
GenBank | HM068905 | 9e-41 | HM068905.1 Glycine max CONSTANS-like zinc finger protein (COL23) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 1e-77 | B-box type zinc finger protein with CCT domain |