PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.XE5AY | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 170aa MW: 19202.8 Da PI: 4.8208 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.7 | 9.9e-33 | 110 | 168 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYG+K+vk+s++pr+YYrCt gCpvkk+ver++edp++v++tYeg+H+h+ Aradu.XE5AY 110 LDDGYRWRKYGKKMVKNSPNPRNYYRCTVDGCPVKKRVERDREDPTYVITTYEGNHTHP 168 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-35 | 96 | 168 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-29 | 103 | 169 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.295 | 105 | 170 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-38 | 110 | 169 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.1E-26 | 111 | 168 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MSSDKNKKAA DSPESGDSSN QWFFELSDYL KLNDDDDQWP DDDNVPPPLP EAEPLFFPNT 60 NEVGDFGASG SSGSNHLQGS SNAREVSGSE KKDASRERVA FKTKSEVEIL DDGYRWRKYG 120 KKMVKNSPNP RNYYRCTVDG CPVKKRVERD REDPTYVITT YEGNHTHPTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-26 | 100 | 167 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-26 | 100 | 167 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.XE5AY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015934926.1 | 1e-124 | probable WRKY transcription factor 50 isoform X1 | ||||
Swissprot | Q8VWQ5 | 6e-44 | WRK50_ARATH; Probable WRKY transcription factor 50 | ||||
TrEMBL | A0A445C8Q9 | 1e-79 | A0A445C8Q9_ARAHY; Uncharacterized protein | ||||
STRING | XP_004498847.1 | 3e-57 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 3e-44 | WRKY DNA-binding protein 50 |
Publications ? help Back to Top | |||
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