PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.X64YA

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 605aa MW: 68435.3 Da PI: 8.4756

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.X64YA	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66	9.9e-21	128	221	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y+e+Ak++GFs+r+++++ + + t+r fvC + g++ ++++++k +r+r+++r+gC+a ++++k++ + +w+vt + ++HnHel Aradu.X64YA 128 EYYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTSTESKPQRNRKSSRCGCQAYMRISKTTefgSPEWRVTGFANHHNHELL 221 69***********9998877356667999*********99999999***************9988899************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-17	128	221	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.273	479	515	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.4E-6	486	513	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.6E-5	490	517	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 605 aa Download sequence Send to blast
KNRGYFIEHH HPHPTHGLFL ALCSRFGTTT AWPSNSGGDR ACSGALPFSF GDQLQQPSSP 60 SLENYSMSEE AGSMLVAYDD PSDQRSLSLD DTSSTEESPG ETRLSLETAN DAIPYIGQRF 120 ATHDAAYEYY SEFAKRCGFS IRRHRTEGKD GVGKGLTRRY FVCHRAGNTP VKTSTESKPQ 180 RNRKSSRCGC QAYMRISKTT EFGSPEWRVT GFANHHNHEL LEPNQVRFLP AYRTISDADK 240 NRILMFAKTG ISAFLGFMNG KAPQTILTDQ NICLKDAIST ELPTTKHAFC IWMIVAKFPS 300 WFNAVLGDRY NEWKAEFYRL YNLESVEDFE LGWREMVCCY GLHSNRHMVN LYSSRSLWAL 360 PFLRSHFLAG MTTTGQSKSI NAFIQRFLSA QTRLAHFVEQ VAVAVDFKDQ TGEQQTMQQN 420 LQNICLKTGA PMESHAATVL TPFAFSKLQE QLVLAAHYAS FPIEDGFLVR HHTKAEGGRK 480 VYWSPQEGII SCSCHQFEFS GILCRHSLRV LSTGNCFQIP DRYLPIRWRR ISIPSSKLAQ 540 SAPNDHTERV QFLQNIVSSL ITESAKSKER LDIATEQVSI LLSRIREQPI SLHGARDFSS 600 INRNL

Sequence ? help Back to Top

Protein Sequence Length: 605 aa Download sequence Send to blast

KNRGYFIEHH HPHPTHGLFL ALCSRFGTTT AWPSNSGGDR ACSGALPFSF GDQLQQPSSP  60
SLENYSMSEE AGSMLVAYDD PSDQRSLSLD DTSSTEESPG ETRLSLETAN DAIPYIGQRF  120
ATHDAAYEYY SEFAKRCGFS IRRHRTEGKD GVGKGLTRRY FVCHRAGNTP VKTSTESKPQ  180
RNRKSSRCGC QAYMRISKTT EFGSPEWRVT GFANHHNHEL LEPNQVRFLP AYRTISDADK  240
NRILMFAKTG ISAFLGFMNG KAPQTILTDQ NICLKDAIST ELPTTKHAFC IWMIVAKFPS  300
WFNAVLGDRY NEWKAEFYRL YNLESVEDFE LGWREMVCCY GLHSNRHMVN LYSSRSLWAL  360
PFLRSHFLAG MTTTGQSKSI NAFIQRFLSA QTRLAHFVEQ VAVAVDFKDQ TGEQQTMQQN  420
LQNICLKTGA PMESHAATVL TPFAFSKLQE QLVLAAHYAS FPIEDGFLVR HHTKAEGGRK  480
VYWSPQEGII SCSCHQFEFS GILCRHSLRV LSTGNCFQIP DRYLPIRWRR ISIPSSKLAQ  540
SAPNDHTERV QFLQNIVSSL ITESAKSKER LDIATEQVSI LLSRIREQPI SLHGARDFSS  600
INRNL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.X64YA

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009777	0.0	AP009777.1 Lotus japonicus genomic DNA, clone: LjT13C08, TM1961, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027363108.1	0.0	protein FAR1-RELATED SEQUENCE 11 isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A103XML8	0.0	A0A103XML8_CYNCS; FAR1 DNA binding domain-containing protein
STRING	GLYMA10G00380.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]