PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.X5F2F | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 362aa MW: 41027.2 Da PI: 4.821 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.4 | 1.5e-09 | 284 | 324 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN ++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Aradu.X5F2F 284 RKRRERINARLRILQGLVPNG-----TKVDISTMLEEAVNYVKFLQ 324 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.253 | 274 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.71E-13 | 279 | 338 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.6E-11 | 280 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-10 | 280 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.91E-10 | 283 | 328 | No hit | No description |
Pfam | PF00010 | 7.6E-7 | 284 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEFLGAFPNN IELDCFKMFS NEKEHDFTYT TTTTSQLFLD QSSSLLGEDD ELNFGLVQST 60 LSSNFISDEN EHYLFHSLDA NPNTKMLHYK SQEESSYNSG GFSGGDTTFF NANMDLTTNY 120 YYSSNYHDDN VLANDVSISM ELLENYDHYQ CHQMEHVDVV PNNKQLELKR KIVEVPEFDV 180 SAENNTSNGS KNQKKKHFVA KDEQDCMKNE RCRKRKVVRN GNEGEERNNN VGLDGQSSSS 240 NINICEDDNA SEENNGGVTS VSHSNGKTRT IRGTAADPQS LYARKRRERI NARLRILQGL 300 VPNGTKVDIS TMLEEAVNYV KFLQLQIKLL SSDDLWMYAP LAYNGLDIGL KLNNLKNFSS 360 SP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 215 | KKKHFVAKDEQDCMKNERCRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.X5F2F |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015972399.2 | 0.0 | transcription factor bHLH85 | ||||
TrEMBL | A0A445CXL9 | 0.0 | A0A445CXL9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G35423.1 | 8e-93 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 6e-52 | bHLH family protein |