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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.X4T4D | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 388aa MW: 42455.4 Da PI: 5.1981 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.4 | 1.6e-20 | 83 | 138 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R++ k Aradu.X4T4D 83 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQVK 138 688999**********************************************9877 PP | |||||||
2 | START | 58 | 3.1e-19 | 274 | 386 | 1 | 92 |
HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela +a++elv +a+ +ep+W ++ + +n+de++++f+++ + +++ea+r+++vv+m++++lve+l+d++ W++++ +a t+ Aradu.X4T4D 274 ELAVAAMEELVGMAQMGEPLWLTMTsidggtsTVLNEDEYVRTFPRGIGpkpagFRSEASRETAVVIMNHVNLVEILMDVN-NWSTMFSgivsRAITI 370 57899********************9****9999************999********************************.**************** PP EEECTT......EEEE CS START 83 evissg......galq 92 ev+s+g galq Aradu.X4T4D 371 EVLSTGvagnynGALQ 386 ******7766666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-23 | 67 | 138 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.19E-20 | 69 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.811 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-18 | 81 | 144 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.78E-18 | 83 | 140 | No hit | No description |
Pfam | PF00046 | 4.2E-18 | 83 | 138 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 17.743 | 265 | 388 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.15E-6 | 267 | 376 | No hit | No description |
Pfam | PF01852 | 2.3E-12 | 275 | 385 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MFQPNMTEAV GGLHYHHQYH PFDMAQNTTT SESDVPRIRE DELFDSATKS GSENLEVEGG 60 GGSGGGGEGG SAGEDQNPRP NKKKRYHRHT QHQIQEMEAF FKECPHPDDK QRKELSRELG 120 LEPLQVKFWF QNKRTQVKTQ TERSENSQLR AENEKLRADN MRYREALSNA SCPSCGGPTA 180 IGEMSFDEHH LRLENARLRE EIDRISAIAA KYVGKPVVNY SNLSPALPPR PLELGVSGGS 240 GGFGGGSDMY SGGAGDFLRS INGPSEADKP LIIELAVAAM EELVGMAQMG EPLWLTMTSI 300 DGGTSTVLNE DEYVRTFPRG IGPKPAGFRS EASRETAVVI MNHVNLVEIL MDVNNWSTMF 360 SGIVSRAITI EVLSTGVAGN YNGALQVV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.X4T4D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015953298.2 | 0.0 | LOW QUALITY PROTEIN: homeobox-leucine zipper protein HDG2 | ||||
Refseq | XP_025687365.1 | 0.0 | homeobox-leucine zipper protein HDG2 | ||||
Swissprot | Q93V99 | 1e-163 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A445E0W4 | 0.0 | A0A445E0W4_ARAHY; Uncharacterized protein | ||||
STRING | XP_007132557.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 1e-155 | protodermal factor 2 |
Publications ? help Back to Top | |||
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