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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.X3MYC | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NF-YA | ||||||||
Protein Properties | Length: 212aa MW: 23340.2 Da PI: 9.7491 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.9 | 1.5e-32 | 76 | 131 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRh+hAl+R RgsgGrF Aradu.X3MYC 76 GPVYVNAKQYHGILRRRQSRAKLEAQNKL-IKNRKPYLHESRHRHALNRVRGSGGRF 131 69***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 6.2E-37 | 73 | 134 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.178 | 74 | 134 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 6.5E-28 | 77 | 131 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.8E-25 | 77 | 99 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 79 | 99 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 8.8E-25 | 108 | 131 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MKPFLSLNYP DTAFDCAQIE CDYSMAHSSY SYEDPLFAGS FVAYGPQGIN QPQMLPQMLG 60 LQSTRVALPL DLAEEGPVYV NAKQYHGILR RRQSRAKLEA QNKLIKNRKP YLHESRHRHA 120 LNRVRGSGGR FLSTKQFEQS NAEVATGAHS SSDPSKDASK VESHLLRTAG NASSITTCSD 180 RTSLSSNSVS RQPEAQLFLA GPANMGRAPV VR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 1e-23 | 75 | 136 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.X3MYC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015954718.1 | 1e-157 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_015954719.1 | 1e-157 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_015954720.1 | 1e-157 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_025688691.1 | 1e-157 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_025688692.1 | 1e-157 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
Refseq | XP_025688693.1 | 1e-157 | nuclear transcription factor Y subunit A-3 isoform X1 | ||||
TrEMBL | A0A445DWF1 | 1e-156 | A0A445DWF1_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA09G07960.4 | 1e-100 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 3e-40 | nuclear factor Y, subunit A3 |