PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB

Protein Properties

Length: 205aa MW: 22930 Da PI: 10.2923

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.WZF00	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.4	5.7e-17	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l + v++ G g+W+t +++ g+ R++k+c++rw +yl Aradu.WZF00 19 KGPWSAEEDEILSKFVQKEGEGRWRTLPKRAGLQRCGKSCRLRWMNYL 66 79********************************************97 PP
2	Myb_DNA-binding	47.9	3.1e-15	77	117	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Aradu.WZF00 77 PDEEDLILRLHRLLGNR-WALIAGRLP-GRTDNEIKNYWNTHL 117 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.9E-23	10	68	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.254	14	66	IPR017930	Myb domain
SuperFamily	SSF46689	1.01E-29	16	113	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-12	18	68	IPR001005	SANT/Myb domain
Pfam	PF00249	6.4E-15	19	66	IPR001005	SANT/Myb domain
CDD	cd00167	1.33E-10	21	66	No hit	No description
PROSITE profile	PS51294	24.804	67	121	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.5E-25	69	122	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-13	71	119	IPR001005	SANT/Myb domain
CDD	cd00167	1.76E-11	77	117	No hit	No description
Pfam	PF00249	4.5E-14	77	117	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSKSTATTTP CCSKVGIKKG PWSAEEDEIL SKFVQKEGEG RWRTLPKRAG LQRCGKSCRL 60 RWMNYLRPSV KRGQIAPDEE DLILRLHRLL GNRWALIAGR LPGRTDNEIK NYWNTHLSKK 120 LIKRGIDPRT HKPLITTNYS TTPVTTSNGG HQPTMTVNPA SEIGNVNNSK FDYAPIISAD 180 WEAEFSNALL NQQDGSSSSS PPNNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-27	19	121	4	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.WZF00

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015970949.1	1e-126	transcription factor MYB3-like
Refseq	XP_025605726.1	1e-126	transcription factor MYB3-like
Swissprot	Q38850	5e-79	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A445CSP5	1e-124	A0A445CSP5_ARAHY; Uncharacterized protein
STRING	XP_010054687.1	2e-86	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3894	30	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	7e-80	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]