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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.WS4W4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 149aa MW: 17083 Da PI: 10.0369 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.6 | 2.9e-10 | 28 | 59 | 4 | 32 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC..... CS HLH 4 ahnerErrRRdriNsafeeLrellPkas...k 32 hn ErrRRdriN+++ L++l+P++ Aradu.WS4W4 28 VHNLSERRRRDRINEKMRALQDLIPNCNkvrL 59 6*************************844550 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 21 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-10 | 23 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.696 | 24 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.62E-6 | 27 | 58 | No hit | No description |
Pfam | PF00010 | 1.0E-7 | 28 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MMDIEEESVG VKKACPTRGV KRSRSAEVHN LSERRRRDRI NEKMRALQDL IPNCNKVRLF 60 ILSNLEPYLL LLEPKMQPEK QRNETKRQEA WQVYGALLCA VGQCMHEKAK IFNNLLSPPT 120 RASSRSKAMI AMSSMTSVCC NEIYTGVLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 32 | 37 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.WS4W4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031132 | 5e-37 | KT031132.1 Glycine max clone HN_WYQ_58 bHLH transcription factor (Glyma20g22291.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015965549.1 | 2e-94 | transcription factor PIF3 isoform X5 | ||||
TrEMBL | A0A445CSJ5 | 2e-73 | A0A445CSJ5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA08G43490.1 | 3e-31 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 7e-23 | phytochrome interacting factor 3 |