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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.WMI1L | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | YABBY | ||||||||
Protein Properties | Length: 178aa MW: 19969.7 Da PI: 9.321 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 192.2 | 2.5e-59 | 16 | 155 | 23 | 170 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPe 120 vsvP +sl+++vtvrCGhC++llsvn+ + q+l+ ++ +++++++l +++ + k+ +++ ++ ++ s ++ +++ pr+pp irPPe Aradu.WMI1L 16 QVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQALPPQDP-----HHHQKQHLSFQDPSSKELGSSS--SRCNKLSAAFDPVDHDPQPRIPP-IRPPE 105 69**********************************9996.....3344455555555544444433..33333333455556667788888.9**** PP YABBY 121 krqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 krqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Aradu.WMI1L 106 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 155 ************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.3E-61 | 16 | 155 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.83E-8 | 100 | 148 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.4E-5 | 103 | 149 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MCGWLCMLYS KNGYWQVSVP CSSLLTIVTV RCGHCANLLS VNMGASLQAL PPQDPHHHQK 60 QHLSFQDPSS KELGSSSSRC NKLSAAFDPV DHDPQPRIPP IRPPEKRQRV PSAYNRFIKE 120 EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLKLDGN KQAKLDQGEG TQKSNGFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.WMI1L |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015936115.1 | 1e-100 | putative axial regulator YABBY 2 isoform X2 | ||||
Refseq | XP_025614301.1 | 1e-100 | putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 4e-66 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A445BWP2 | 1e-131 | A0A445BWP2_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G46560.1 | 3e-90 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 2e-52 | YABBY family protein |
Publications ? help Back to Top | |||
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