PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.WG8DB
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 234aa    MW: 27015.8 Da    PI: 6.6675
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.WG8DBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR143.41.1e-1351127277
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwe 77 
                  fYn++++   Fs+rk k  +++ +++i ++tfvC ++g+r  +  + t+k+r +++etr+gC a+++v+ +    w 
  Aradu.WG8DB  51 FYNAFGRVNEFSIRKFKVGRNEIDKRILWQTFVCLRQGYRIFRGIDeTNKKRAPKSETRCGCVAQMRVHIDVGRDWW 127
                  9**************************************99887664788999****************99866664 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1151127IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDELLVDSDG NDVKDLLLNS TRSIGRVNFV GLSVDDAKKY VFSDLDVAYA FYNAFGRVNE  60
FSIRKFKVGR NEIDKRILWQ TFVCLRQGYR IFRGIDETNK KRAPKSETRC GCVAQMRVHI  120
DVGRDWWCKH WSDQEQLFIQ GRCSTCFELP ESLILKRWTM KAKEAHIRLE QRGSLVGDGS  180
YESRTAAMND ELEGLLFAAY GDLGDFKDVM EWIVEHHERA TLLLMNGDTR VGNL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.WG8DB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181559.29e-79protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AIF34e-76A0A445AIF3_ARAHY; Uncharacterized protein
TrEMBLA0A445DUK73e-75A0A445DUK7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1459823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.11e-09FAR1-related sequence 11