PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.VV430
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ARF
Protein Properties Length: 556aa    MW: 62094.9 Da    PI: 7.6291
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.VV430genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23124225199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d +g+ W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF +   +++ 
  Aradu.VV430 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRA--QNGD 217
                  89****************************986445444..8************************************************43..6777 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Aradu.VV430 218 LCVGIRRA 225
                  8****996 PP
2Auxin_resp1095e-36249332183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a++ a ++ +FevvY+Pr s++eF+vk+++v+++++++++ GmRfkm fetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+
  Aradu.VV430 249 AVNCAVNGRPFEVVYYPRGSSPEFCVKASSVRASMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQLSDPLHWPHSPWRLLQ 332
                  57788999**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.59E-30110224IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-38119234IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-22123224No hitNo description
SMARTSM010192.5E-21124226IPR003340B3 DNA binding domain
PfamPF023622.0E-21124225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929124226IPR003340B3 DNA binding domain
PfamPF065073.7E-31249332IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MDRTRTPIQT CLDSQLWHAC AGPMVQMPPL NTKVLYFPQG HAEHQQAHAH GRKPHFAPAM  60
KTPIPPFFPC TLTAIKYMAE PETDEVYVKI TLTPLLSDPE EHDHHCSSNH NSFLDNNGEK  120
PASFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTIIAKDVH GQCWKFRHIY  180
RGTPRRHLLT TGWSNFVNHK KLVAGDSIVF LRAQNGDLCV GIRRAKKGGI AAGTATNTNI  240
TTNNNVGEAV NCAVNGRPFE VVYYPRGSSP EFCVKASSVR ASMQIQWCSG MRFKMPFETE  300
DSSRISWFMG TISSVQLSDP LHWPHSPWRL LQVVWDEPDL LQNVKCVNPW LVELVSNVPN  360
FHLSPFSPPR KKQRFLQDQP DFQLINQIPI PSSFSTIQDL QGIQGARHAH QFGLAPQDFH  420
ILDGFPRLDH AAQQPHRPSF GIYNKNNSAT TKNNNNLEIS CLLSVGNPGQ SFIKEESCSN  480
ETKAPHILLF GKLIHTDQQN HSSNSSNSVY EGTNSSLKTS TENSSDDDGG SPWFKNQHKN  540
NDLVGTENIN ILCMAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-78435346388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.VV430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015942629.10.0auxin response factor 16
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLA0A445BCX10.0A0A445BCX1_ARAHY; Auxin response factor
STRINGGLYMA10G35481.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-174auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]