PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.VI1X4
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 542aa    MW: 59820.8 Da    PI: 7.7043
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.VI1X4genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding605.3e-19118164148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++v+ v ++G+  W++Ia+ ++ gR +kqc++rw+++l
      Aradu.VI1X4 118 KGPWTKEEDDKIVEMVSKYGPSKWSLIAKSLP-GRIGKQCRERWHNHL 164
                      79******************************.*************97 PP
2Myb_DNA-binding538e-17170213146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++W+ eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
      Aradu.VI1X4 170 KDAWSSEEELALMNAHRIYGNK-WAEIAKVLP-GRTDNAIKNHWNS 213
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.62257112IPR017877Myb-like domain
SMARTSM007170.09761114IPR001005SANT/Myb domain
SuperFamilySSF466897.03E-763122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-1064122IPR009057Homeodomain-like
PROSITE profilePS5129432.009113168IPR017930Myb domain
SuperFamilySSF466896.6E-32115211IPR009057Homeodomain-like
SMARTSM007173.6E-18117166IPR001005SANT/Myb domain
PfamPF002495.3E-18118164IPR001005SANT/Myb domain
CDDcd001672.13E-16120164No hitNo description
Gene3DG3DSA:1.10.10.606.4E-28123171IPR009057Homeodomain-like
PROSITE profilePS5129422.005169219IPR017930Myb domain
SMARTSM007174.7E-16169217IPR001005SANT/Myb domain
PfamPF002496.6E-15170213IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-23172219IPR009057Homeodomain-like
CDDcd001672.06E-12172215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
EKDMDELKSE EGCIENKQST AASSSFVSEG SGSSIPKSPG IGSQASASPP HRRTTGPIRR  60
AKGGWTAEEE NYYEVEPRQF VFANHKTIFS VPPEFFPDRS EVQCLHRWQK VLNPELVKGP  120
WTKEEDDKIV EMVSKYGPSK WSLIAKSLPG RIGKQCRERW HNHLNPDIKK DAWSSEEELA  180
LMNAHRIYGN KWAEIAKVLP GRTDNAIKNH WNSSLKKKMD FYLATGRLPP TLKNSPHVVV  240
KDTVRHSKPT LFVCSNKESD TAVESSSETT EITQLDSSDQ NDKNRLECLV AVGDSSGAPL  300
VNESVDTECK AGSSNINISC NKSELVSSGT FQVHSAKNSE NPGLSGKPSE SCRDNAKMSN  360
NRFCRTCFSH ETPVSGSLCY EPPQLDISVP LDSLYSNILH EQNDCSSPIA SSVGFFSPLG  420
VNGSENVTPE SILKMAAKTF PSTPSIMRKR RTVSQAHVTP SKALKADIDS QTSKVQERSK  480
DNSDSIVGSD INNNKDFNAS PPYRLRPKRT AVVKSIEKQL EFAFEKEKDD SGMHKVQGGA  540
LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-64612195159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-64612195159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451MRKRRT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.VI1X4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015950002.10.0transcription factor MYB3R-3
TrEMBLA0A445EC010.0A0A445EC01_ARAHY; Uncharacterized protein
STRINGGLYMA18G39740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-128myb domain protein 3r-5