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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.VDI9P | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GeBP | ||||||||
Protein Properties | Length: 428aa MW: 46941.9 Da PI: 4.5061 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 120 | 1.2e-37 | 114 | 209 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 lfqrlw++eDei lLqG++++++++g+s ++d+ fy+++k++++++++k+qlveKirrLKkK+++ +k+ sgke++f+++hdq +fe+s+kiW Aradu.VDI9P 114 LFQRLWTDEDEIELLQGFLEYTSQRGSSHHNDTALFYDQIKSKLQLDFNKNQLVEKIRRLKKKYRNVLNKIGSGKEFNFKSAHDQATFEISRKIWS 209 79*********************************************************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 5.8E-35 | 115 | 209 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MMASEQHDTV FPEEDMDEDD EESQEDEEEE DIDDDDVLPD DEENEPSPST SSAALAVTVA 60 VPSSVIPNGE KAPISTPTAN AATTVVVALE GSSSDPKRQQ QIEEKKPLDD SRRLFQRLWT 120 DEDEIELLQG FLEYTSQRGS SHHNDTALFY DQIKSKLQLD FNKNQLVEKI RRLKKKYRNV 180 LNKIGSGKEF NFKSAHDQAT FEISRKIWSN LGPVADNALD DDEINLNPIP NPNPNLNFTF 240 ALPAPRTETL FGNSSEKKTP PSRKRSRPRS SAATTVKIEE RRESMDGSAS HKEHNFNLNA 300 AATGLPATPN NNCESNKCSG GYGIPGLVEE TVRSCLSPLV KELVGGAAMG GGHFGGRGFG 360 GGGFSLNPIP LGFGAMNNLG LGLGGGELVD ERWRKQQILE LEVYSKRLEL VQEQIKAALE 420 ELRSTAGS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 354 | 362 | GGRGFGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.VDI9P |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015968523.1 | 0.0 | probable transcription factor At3g04930 | ||||
Refseq | XP_025603590.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A444YKD7 | 0.0 | A0A444YKD7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA19G43180.1 | 1e-153 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.1 | 3e-71 | DNA-binding storekeeper protein-related transcriptional regulator |