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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.V7DVH | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 282aa MW: 31299.9 Da PI: 7.0064 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.2 | 1.7e-14 | 86 | 132 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Aradu.V7DVH 86 KSHSEAERRRRERINNHLSKLRSLLPST-----TKTDKASLLAEVIQHVKEL 132 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.003 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-12 | 86 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-15 | 87 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-15 | 87 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-13 | 89 | 138 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.05E-5 | 96 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MPSIQELPFN NHESFIVPPQ QQQQQASPYA SFFNSRRVHP SSSSSMQFAA AYHHHEGATS 60 SFDLQAELSK MTAQEIMEAK ALAASKSHSE AERRRRERIN NHLSKLRSLL PSTTKTDKAS 120 LLAEVIQHVK ELKRQTSMIA ETSSVPTESD ELTVDDASDE DGKLVIKASL CCEDRSDLLP 180 ELIKTLKSMK LRTLKADITT LGGRVKNVLF ITAEQDYYSS STGNEDHHHQ HDHNNSYQYC 240 ISSIQEALKA VMEKSNGGVG NEPGSSSASV KRQRTNIISS IS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 96 | ERRRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.V7DVH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015942739.1 | 0.0 | transcription factor bHLH30 | ||||
Swissprot | Q9S7Y1 | 2e-91 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A445BCJ8 | 1e-179 | A0A445BCJ8_ARAHY; Uncharacterized protein | ||||
STRING | XP_004297146.1 | 1e-111 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4589 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-84 | bHLH family protein |
Publications ? help Back to Top | |||
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