PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.V6ZMF

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 405aa MW: 43265.2 Da PI: 6.0344

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.V6ZMF	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.4e-12	225	270	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Aradu.V6ZMF 225 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 270 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.58E-17	218	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.47E-13	218	274	No hit	No description
PROSITE profile	PS50888	17.39	220	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-16	222	279	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-9	225	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	226	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MQPCSREMQS LNSLFNNQQQ IQMDPATSQE DDFIKQMLST IPPPPPPSWN LDHTPPNPKP 60 YWLDNDNVAF PNYDDPSTLA SKFRNHQITA TSSSKAAAAA LLLQQQLLMT RGLSGADSAI 120 LHHMFDSSQN DVVDASSSSF KSPNPSSADG SVQALYDGFT GSLQGAALAS NQTHHFQHPQ 180 VQTSSNPNQM QGQGQGTSQG GNPNPNPGQP KQRVRARRGQ ATDPHSIAER LRRERIAERM 240 KALQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL VADINSEGGG 300 DCVQTNGNQT AGASSSNDSL TMTEQQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST 360 ATATCHPRNP IMNPTDGPSS PGMSVLTVQS ANGDAVKDAT SVSKP

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MQPCSREMQS LNSLFNNQQQ IQMDPATSQE DDFIKQMLST IPPPPPPSWN LDHTPPNPKP  60
YWLDNDNVAF PNYDDPSTLA SKFRNHQITA TSSSKAAAAA LLLQQQLLMT RGLSGADSAI  120
LHHMFDSSQN DVVDASSSSF KSPNPSSADG SVQALYDGFT GSLQGAALAS NQTHHFQHPQ  180
VQTSSNPNQM QGQGQGTSQG GNPNPNPGQP KQRVRARRGQ ATDPHSIAER LRRERIAERM  240
KALQELVPNA NKTDKASMLD EIIDYVKFLQ LQVKVLSMSR LGGAAAVAPL VADINSEGGG  300
DCVQTNGNQT AGASSSNDSL TMTEQQVAKL MEEDMGSAMQ YLQGKGLCLM PISLATAIST  360
ATATCHPRNP IMNPTDGPSS PGMSVLTVQS ANGDAVKDAT SVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	234	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.V6ZMF

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015932806.1	0.0	transcription factor bHLH66
Refseq	XP_025607566.1	0.0	transcription factor bHLH66
Swissprot	Q9ZUG9	9e-87	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A445EMW8	0.0	A0A445EMW8_ARAHY; Uncharacterized protein
STRING	XP_007138416.1	1e-162	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	9e-61	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]