PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.V6U4I | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 467aa MW: 52014.2 Da PI: 6.1979 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.9 | 9e-28 | 182 | 240 | 1 | 60 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 l+DgynWrKYG K kg e+prsYYrC ++C++kkkv r+ d+k++ i+Y+g+Hnh+k Aradu.V6U4I 182 LNDGYNWRKYGEKRTKGGENPRSYYRCGEPNCTMKKKVGRNL-DGKIIAIMYKGNHNHPK 240 58****************************************.***************85 PP | |||||||
2 | WRKY | 100.7 | 8.5e-32 | 322 | 380 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++pr+YY+C s+gC+vkk+ver+a+d k v +tYeg+Hnh+ Aradu.V6U4I 322 LDDGYRWRKYGQKVVKGNPNPRNYYKCVSPGCNVKKHVERAADDIKSVMTTYEGKHNHD 380 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.2E-24 | 176 | 241 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.022 | 177 | 241 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.05E-21 | 181 | 241 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.0E-26 | 182 | 240 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.3E-21 | 183 | 239 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-35 | 307 | 382 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-28 | 314 | 382 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.46 | 317 | 382 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.2E-36 | 322 | 381 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.9E-24 | 323 | 380 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MSFTTFSGLL SRRYNNTSMV DDNCWETCIP RTGDDNHGEF FSSIIYPSYS DFPPGFNPNE 60 FLDAFLSESN SLNWRNSSSE NQQSKEVEEK YYSDPSTDVS LLQSSSNIFE EGDPQRKQDT 120 FTILESGMLV DFSSPMTNTT NFQDPYLRNF SEMALAVPEI HSTLAPQLNC HKSINEDEDG 180 DLNDGYNWRK YGEKRTKGGE NPRSYYRCGE PNCTMKKKVG RNLDGKIIAI MYKGNHNHPK 240 PSKPVGSANV PLVNELYASS YTDSGNLNQQ SVGGGVENQL GAHTKRLKGG NGIYSYLFNP 300 SGGRAIKEPR VVVQTTTEID ILDDGYRWRK YGQKVVKGNP NPRNYYKCVS PGCNVKKHVE 360 RAADDIKSVM TTYEGKHNHD VPQERSSFAS RIASLTNNFA TPSSSSSPSL HDTSLSLSSP 420 RANNENQASQ ELTTLPFIVG IPNFGRSLIG TSYANEGPSS NNEEKKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-36 | 182 | 382 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-36 | 182 | 382 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.V6U4I |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015950534.1 | 0.0 | probable WRKY transcription factor 26 isoform X1 | ||||
TrEMBL | A0A445EA57 | 0.0 | A0A445EA57_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA01G31921.1 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF30323 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07100.1 | 4e-70 | WRKY DNA-binding protein 26 |