PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.V66GG
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 213aa    MW: 23470 Da    PI: 6.9604
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.V66GGgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.41.8e-31118174158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep++VNaKQy++Il+RRq+Rak+e+e+k  +++rkpylheSRh hAl+R+Rg+gGrF
  Aradu.V66GG 118 EEPVFVNAKQYHGILRRRQSRAKAESERKA-IRNRKPYLHESRHLHALKRARGCGGRF 174
                  69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.7E-35116177IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.576117177IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-26119174IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.3E-23120142IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860122142IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.3E-23151174IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVEDNEADGK QQSESEMQSS SANGTSDPDT GSQNIQFEKP AQLGDVLAMA IAIGHHPMSL  60
ASLAPPGYPY PDPYYRSIFA PYDTQAYAPL PYGGQPMVHF QLMGIQQAGV PLPSDAFEEP  120
VFVNAKQYHG ILRRRQSRAK AESERKAIRN RKPYLHESRH LHALKRARGC GGRFLNAKEN  180
ENGHNDAAST DKSQCNINPN SDKSDITSSD RTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A7e-21117184168NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.V66GG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015956129.11e-122nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_015956130.11e-122nuclear transcription factor Y subunit A-7 isoform X1
SwissprotQ84JP12e-61NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A444ZXH91e-130A0A444ZXH9_ARAHY; Uncharacterized protein
STRINGXP_007159545.16e-90(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.26e-54nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]