PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.V2IZ7

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 488aa MW: 55839.7 Da PI: 9.5324

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.V2IZ7	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.1	1.3e-17	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk vGFs+r+++++++ +ei+++ +Cskegk + + + +++ +++ +C a++ ++ k g w ++k++l+H+H+++p Aradu.V2IZ7 11 KFYRNYAKVVGFSTRVRSTNRK--GNEIKNQLITCSKEGKLKYKISP---TEKMNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 97 6**************98887..8889**********99877...8899999*******998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-15	11	97	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.568	275	311	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.001	286	313	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MTFTILKDAG KFYRNYAKVV GFSTRVRSTN RKGNEIKNQL ITCSKEGKLK YKISPTEKMN 60 PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPTKA EILKQHRELS MSIHRTIENN 120 EEAGIRPSKT YQSFVAAADL YEDRHIWVPI YLDHHFWAGM RSTQRSESMH SFFNKFITWN 180 SSLIQFVKQC DNCLGSREQA ERESDAADFH TVIPCATKSS IEAQFQDVYT HQKFREVQAQ 240 FKGKANCITR LTNSALGYSV YEVGEQVSSS IFNKFVITYD SVAAEVKCQC LLFESRGILC 300 CHALSVLSFE QVSQVSPRYI LERWSKKVKR RHTHIKSSHD EPLMEPRSKR FDQLVFRLQN 360 ICEFASESEE LTAFLHRAYD NVMAEMESLK AKRKVTSSLS HEDANLESVN ELQSPPRIRT 420 RGRPKNRLGS KLDKQIANTT KKKKTKVLSE INLFDATSVV HSNNSQYQGH VMNYQFTVPV 480 AVDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MTFTILKDAG KFYRNYAKVV GFSTRVRSTN RKGNEIKNQL ITCSKEGKLK YKISPTEKMN  60
PTAGLNCPAR IYIHTLKDVG AWIISKVVLD HSHPCCPTKA EILKQHRELS MSIHRTIENN  120
EEAGIRPSKT YQSFVAAADL YEDRHIWVPI YLDHHFWAGM RSTQRSESMH SFFNKFITWN  180
SSLIQFVKQC DNCLGSREQA ERESDAADFH TVIPCATKSS IEAQFQDVYT HQKFREVQAQ  240
FKGKANCITR LTNSALGYSV YEVGEQVSSS IFNKFVITYD SVAAEVKCQC LLFESRGILC  300
CHALSVLSFE QVSQVSPRYI LERWSKKVKR RHTHIKSSHD EPLMEPRSKR FDQLVFRLQN  360
ICEFASESEE LTAFLHRAYD NVMAEMESLK AKRKVTSSLS HEDANLESVN ELQSPPRIRT  420
RGRPKNRLGS KLDKQIANTT KKKKTKVLSE INLFDATSVV HSNNSQYQGH VMNYQFTVPV  480
AVDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.V2IZ7

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445AF03	0.0	A0A445AF03_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-31	far-red elongated hypocotyls 3