PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.UWD0E
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 268aa    MW: 30742.2 Da    PI: 6.046
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.UWD0EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.5e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++lv +v+++G  +W++ ++  g+ R++k+c++rw +yl
      Aradu.UWD0E 14 KGTWTPEEDKKLVAYVTRYGCWNWRLLPKFAGLERCGKSCRLRWMNYL 61
                     799*****************99************************97 PP
2Myb_DNA-binding54.33.2e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE++ ++ +++ lG++ W++Ia+ ++ gRt++++k++w+++l
      Aradu.UWD0E  67 RGNYTPEEEDTIITLHQTLGNR-WSLIAANLP-GRTDNEIKNHWHTVL 112
                      899*******************.*********.***********9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.096961IPR017930Myb domain
SuperFamilySSF466894.23E-3011108IPR009057Homeodomain-like
SMARTSM007173.3E-101363IPR001005SANT/Myb domain
PfamPF002492.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231568IPR009057Homeodomain-like
CDDcd001674.65E-91661No hitNo description
PROSITE profilePS5129425.74762116IPR017930Myb domain
SMARTSM007175.7E-1766114IPR001005SANT/Myb domain
PfamPF002496.0E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2669116IPR009057Homeodomain-like
CDDcd001672.16E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MVRTPLCDKS GMRKGTWTPE EDKKLVAYVT RYGCWNWRLL PKFAGLERCG KSCRLRWMNY  60
LRPNIKRGNY TPEEEDTIIT LHQTLGNRWS LIAANLPGRT DNEIKNHWHT VLKKRIQDKS  120
SSGTGKGSKA GKAKASYKVK NNNNNNYDSP TTLMEQDFNN IGASCDDRRH NNSPLSPQPS  180
SSGFSCVTTD TETAAINHED NNLIILENNN NDYGELGFFD AYDEPVSADF WTEPYLIDFS  240
YVPPSSEEYF LNPIWDIEFW GQNSLYLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.UWD0E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936038.10.0myb-related protein Myb4
TrEMBLA0A445BX121e-166A0A445BX12_ARAHY; Uncharacterized protein
STRINGXP_007149916.14e-94(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-59myb domain protein 15