PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.UD5N8
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 530aa    MW: 58242.8 Da    PI: 4.6848
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.UD5N8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-10187209426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  e C f+++tGtCk+G +CkF+H+
  Aradu.UD5N8 187 EDCAFYLKTGTCKFGFNCKFNHP 209
                  89********************9 PP
2zf-CCCH29.11.6e-09237257525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  +C++++r+G Ck+G  CkF+H
  Aradu.UD5N8 237 ECKYYLRSGGCKFGKACKFNH 257
                  8******************** PP
3zf-CCCH38.51.9e-12282304426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C++++rtG Ck+G++CkF+H+
  Aradu.UD5N8 282 KQCPYYMRTGSCKFGANCKFNHP 304
                  67********************9 PP
4zf-CCCH29.21.6e-09416442127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++f++tG Ck+ ++CkF+H++
  Aradu.UD5N8 416 PGEPECSYFLKTGDCKFKSNCKFHHPK 442
                  5799*********************96 PP
5zf-CCCH352.4e-11464487326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  +  C++++r+G+Ck+G+ CkF H+
  Aradu.UD5N8 464 QNVCSHYSRYGICKFGPACKFDHP 487
                  568********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.136183211IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4183210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6184212IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-8187209IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.704232260IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4232259IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7237257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5237260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4238259IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563278306IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5278305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6279305IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10281304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5283303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061415443IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4415442IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-7417442IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5420444IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6459487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014461489IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-5461488IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-8464487IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MEPSESESVG SSTTTTTKDP QLGSQSEPSS PFPNHHHDPQ QSEPDLSQNL GLQDETRDEL  60
GAEFHKKLDL KDEDERVAEN EKKDSNFVAG SGEYGGEELG GEGGCAPETG EAQGSDDNDG  120
WDDDEGYGWN ENVKESEVDK VSGDFDVDGD GNGDDEVEVE GDEEVEKKKD RSSGRVQQQY  180
PLRPDAEDCA FYLKTGTCKF GFNCKFNHPL GRRKNQAVKE KVGGEREEPA EKSGQIECKY  240
YLRSGGCKFG KACKFNHTRG KPSAAPLLEL NFLGLPIRLG EKQCPYYMRT GSCKFGANCK  300
FNHPDPTSGG RVGDSVSGFG NGNYVPLQGA SQPSGPSWSS SKTLNDTAPF VPMMLSPSQA  360
VSPRSPEWNG YQAPVYLSER SMHPPSAYVM NNPTIETPMY MHQPKQTPIE EFPERPGEPE  420
CSYFLKTGDC KFKSNCKFHH PKNRVARIPP CNLSDKGLPL RPDQNVCSHY SRYGICKFGP  480
ACKFDHPVIN PSPPSSPGLD QQTSYTDTPN EMTTMEGNGD ANDEAIRQPV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.UD5N8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954506.10.0zinc finger CCCH domain-containing protein 43 isoform X1
RefseqXP_025688562.10.0zinc finger CCCH domain-containing protein 43 isoform X1
SwissprotQ9STM41e-132C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A445DWR00.0A0A445DWR0_ARAHY; Uncharacterized protein
STRINGXP_007137964.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-128C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]