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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.UA4JV | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TALE | ||||||||
Protein Properties | Length: 549aa MW: 59308.7 Da PI: 7.631 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.8 | 1e-09 | 339 | 376 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Aradu.UA4JV 339 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 376 664459******************************88 PP | |||||||
2 | BELL | 69.1 | 8.4e-23 | 213 | 271 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+e+ vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi Aradu.UA4JV 213 ERQEIQMKKAKLITMLDEI-------------VISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQI 271 79***************85.............***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.3E-42 | 155 | 269 | IPR006563 | POX domain |
Pfam | PF07526 | 9.5E-29 | 160 | 268 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.195 | 317 | 380 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.96E-12 | 320 | 381 | No hit | No description |
SMART | SM00389 | 5.3E-9 | 320 | 384 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 321 | 387 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-29 | 323 | 386 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.1E-18 | 337 | 376 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MATYFHGNSE IQGGGVDGGL QTLVLMNPGY IQFSDTPPPP PPHGGNLMLL NSLAAAGNSS 60 LASHAPLSQQ FLGVPLAAEH MHGHHDVSVA LHGYAPRGHY NLWNTIDPTT AARDATRATQ 120 GLSLSLPAMS GDDVRVSGGS PSSASGVTNG GGGVSGIQSV LLNSKYLRAT QELLEEVAKV 180 GVGESSSNGG NSGGDGSVGE GSEKRCAELS TTERQEIQMK KAKLITMLDE IVISSFEQAA 240 GIGSARTYTA LALQTISKQF RCLKDAITGQ IKAANKSLGE EDYFGGGGGK IEGSRLKYVD 300 HHLRQQRAIQ QLGMMHHNAW RPQRGLPERS VSVLRAWLFE HFLHPYPKDS DKHMLAKQTG 360 LTRSQVSNWF INARVRLWKP MVEEMYLEEM KDHDMNNSNN NNVSEDNKSS KSNEDPNNAK 420 NSPPRDSNSE SDTKKSFNSK QENVSISTPT SQIGGNSRNN NNNNSSGFSF MGSSELLDGI 480 TQGSSPKKPR SNEINIQLGR RLDRMSGEQH SNEFGAVNNT QNPHHSSAAF QSMQNSKRFA 540 AQLLPDYVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 9e-17 | 326 | 383 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 9e-17 | 326 | 383 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.UA4JV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015951375.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015951376.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015951378.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015951379.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_020991824.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
TrEMBL | V7D1A0 | 0.0 | V7D1A0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162972.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1627 | 34 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-106 | BEL1-like homeodomain 1 |