PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.U39XE
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 481aa    MW: 56137.5 Da    PI: 10.6032
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.U39XEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-1329109995
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SSSEE..EEE CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.grsefelvvk 95 
                    l+  ++ lpkkf++++g++   s  l l+ ++g +W+v      ++g++++++GWkeFv    L++g ++ F+++ g+s     v+
  Aradu.U39XE  29 T-LQDENFKLPKKFTRKYGSN--LSNPLYLKPPDGTEWRVDW--IIHDGGILFKEGWKEFVAYYSLDDGHVLRFEYNiGTSH--IEVQ 109
                  3.344559**********988..7778***************..99999**************************9733333..3555 PP
2B3444.1e-142763561699
                  EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   ++p kf++++  +++++  +++     + + vkliyr +s+  ++++GW+ F++a +L++gD+++Fkl++r++  + v+++r+
  Aradu.U39XE 276 RYFPTKFFRKYFVNNPQNANIRFG---KKLFPVKLIYRPSSCDAFMSAGWNFFARASKLQAGDVCLFKLVNRKDPVFDVHICRR 356
                  578999999997676787778854...499****************************************9999889*****98 PP
3B3542.9e-17393479999
                  HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +  +++r +l+  f +++ +k++++  ++l+    + W v++iy+ +s+ +++++GW++F++an+L++gD++vF+l+++++  ++v+v+r 
  Aradu.U39XE 393 SDPRRSRPYLSAIFYRKYFKKNQQN--VKLQ-FGKELWPVTIIYNPSSRNTFISAGWSSFARANKLEAGDVCVFELINKKDL-FNVHVCRV 479
                  4445667899999999997665565..5544.35589****************************************87444.69999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-1815114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1817114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.19620114IPR003340B3 DNA binding domain
CDDcd100176.72E-1320112No hitNo description
SMARTSM010192.1E-1121114IPR003340B3 DNA binding domain
PfamPF023627.7E-1130108IPR003340B3 DNA binding domain
SuperFamilySSF1019362.88E-13257356IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-14258356IPR015300DNA-binding pseudobarrel domain
CDDcd100174.99E-11260355No hitNo description
SMARTSM010194.0E-5262357IPR003340B3 DNA binding domain
PfamPF023621.5E-12276357IPR003340B3 DNA binding domain
PROSITE profilePS508639.305303357IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-21378479IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-19379479IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-17384478No hitNo description
SMARTSM010193.1E-15386480IPR003340B3 DNA binding domain
PfamPF023622.3E-15392479IPR003340B3 DNA binding domain
PROSITE profilePS5086311.688427480IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MASSNYQQND YSPSNSPVIR FFKVILGKTL QDENFKLPKK FTRKYGSNLS NPLYLKPPDG  60
TEWRVDWIIH DGGILFKEGW KEFVAYYSLD DGHVLRFEYN IGTSHIEVQI SDMSGLQIKY  120
PVNDQIKEHP PQHRVEPVER PKEQQTRDVD SSPNTQNMRL NEVRQKKISN EPLLGVRGQL  180
RKKLRAPVSS ASKGRQLEND TQIREGIKFE KKNHKMPVSI NQDSNGKRNR KSKDFESSVS  240
PCLARPESLK KAKKFKWEKP SFIIKIKQLS QMRAPRYFPT KFFRKYFVNN PQNANIRFGK  300
KLFPVKLIYR PSSCDAFMSA GWNFFARASK LQAGDVCLFK LVNRKDPVFD VHICRRQRRE  360
SFSKSVTHEI QLLKEVTEIN SQNPSFMVKI KDSDPRRSRP YLSAIFYRKY FKKNQQNVKL  420
QFGKELWPVT IIYNPSSRNT FISAGWSSFA RANKLEAGDV CVFELINKKD LFNVHVCRVQ  480
C
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.U39XE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015946762.20.0B3 domain-containing transcription factor VRN1
TrEMBLA0A445B1U90.0A0A445B1U9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-23B3 family protein