PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

LBD

Protein Properties

Length: 229aa MW: 25293 Da PI: 9.4618

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.U0BF0	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.5	1.7e-41	43	142	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lq+q+++l+ael++++ Aradu.U0BF0 43 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISTLQHQVQSLQAELNAVR 140 7***********************************************************************************************99 PP DUF260 99 ee 100 +e Aradu.U0BF0 141 SE 142 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.747	42	143	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-41	43	140	IPR004883	Lateral organ boundaries, LOB
PRINTS	PR00049	1.6E-5	125	141	IPR017987	Wilm's tumour protein
PRINTS	PR00049	1.6E-5	175	189	IPR017987	Wilm's tumour protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MSRERERFEE IGKKIKREGD NVSSQMGRRH MLGPPGTLNT ITPCAACKLL RRRCAQECPF 60 SPYFSPHEPQ KFASVHKVFG ASNVSKMLME VPECQRADAA NSLVYEANVR LRDPVYGCMG 120 AISTLQHQVQ SLQAELNAVR SEILKYKLRE ANNNIIIPSS HHHLPMLPSS GSAVSVAAPP 180 PPPPPPPPPL PPNSLPPISS SSSSMYIQQQ QRPPTNYSRI PSDNISYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-45	35	150	3	118	LOB family transfactor Ramosa2.1
5ly0_B	7e-45	35	150	3	118	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.U0BF0

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015945145.1	1e-167	LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-87	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A444X553	1e-140	A0A444X553_ARAHY; Uncharacterized protein
STRING	GLYMA06G15050.1	1e-117	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	1e-88	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]