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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.T7DND | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 350aa MW: 37760.3 Da PI: 6.2482 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 86.4 | 2.6e-27 | 176 | 237 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqKe+ gs++ rsYYrCt++ gCp+kk+v++ +++p+++e+tY g+H+++ Aradu.T7DND 176 MEDGFTWRKYGQKEILGSKYQRSYYRCTHQkqyGCPAKKQVQKIDNNPNIFEVTYVGDHTCH 237 58***************************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 20.644 | 171 | 239 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-27 | 171 | 238 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-25 | 173 | 238 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-36 | 176 | 238 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-25 | 177 | 237 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MEEVLNSISH GCELAKKIES EQLANMANIQ PDILVSSIDE VVKAFNGAKE KLLMTMVNNN 60 SSSSSSSFAQ QQMGACGASS FSIMMQEWMM KSSSSTSYAA QTTMDQVLLQ MQGFPAGGGD 120 LQQLRNVEGS SSMDKSMKGL EVHQLSPSRP RKRKNDAEKR VVNLPAQQLG NTEMPMEDGF 180 TWRKYGQKEI LGSKYQRSYY RCTHQKQYGC PAKKQVQKID NNPNIFEVTY VGDHTCHMSS 240 TAPSSFPQQL QLDNINIMPP NNPLQGAGGP NTSSPSSSMW MHSVSLSLGG GGDGSSSAGA 300 GPSTLKYGVG GADYLVADMA DVMFNSGSSS GNCSMESLFP TSDDPSEKKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-19 | 176 | 236 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.T7DND |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015932976.1 | 0.0 | WRKY transcription factor 55 | ||||
Refseq | XP_025610517.1 | 0.0 | WRKY transcription factor 55 | ||||
TrEMBL | A0A445CGU7 | 0.0 | A0A445CGU7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA04G40121.1 | 5e-83 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8629 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 5e-47 | WRKY DNA-binding protein 55 |