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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.T4PBI | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 343aa MW: 39261.2 Da PI: 4.6023 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.6 | 1.6e-11 | 176 | 219 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr ++Pk + K++ +iL +++Y+k+L Aradu.T4PBI 176 LMAERRRRKRLNDRLSMLRAIVPKiS------KMDRTSILGDTIDYMKEL 219 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.237 | 170 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.29E-15 | 173 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.8E-11 | 176 | 225 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-9 | 177 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-15 | 177 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.80E-4 | 177 | 223 | No hit | No description |
CDD | cd04873 | 9.72E-5 | 269 | 332 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MEIFYDDHHD FLEELMALRR ETFMETNYNN TTTFHSSFPP NSSSSSYQQE DLILPHQIYD 60 DNNFFNQIYD SLLFDEQSPP PLMMDHYSSS SYYSNNTSSN LDSYYPPLSF MEEEELQNLE 120 IETATRCKVE PVVTVTCCDS ESPAAIFNAD SVMGNKEIRK NNRSTKKVVG QPSKNLMAER 180 RRRKRLNDRL SMLRAIVPKI SKMDRTSILG DTIDYMKELL EKINNLQQEA VKVEDSNMAG 240 GIFKDVIKPN EILIRNSPKF EVERDVDNTR VEICCAGKPG MLLSTVNTLE ALGLDIQQCV 300 ISCFNDFTMH VSCSEEPEQR AMLSSEDIKQ ALFRSAGYGG RCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 185 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.T4PBI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015935037.1 | 0.0 | transcription factor bHLH93 isoform X1 | ||||
Refseq | XP_020984563.1 | 0.0 | transcription factor bHLH93 isoform X1 | ||||
Refseq | XP_020984564.1 | 0.0 | transcription factor bHLH93 isoform X2 | ||||
Swissprot | Q9LSL1 | 8e-79 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A445BTV5 | 0.0 | A0A445BTV5_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA06G09670.1 | 1e-119 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-80 | beta HLH protein 93 |
Publications ? help Back to Top | |||
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