PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.T3IMA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 336aa MW: 37737.1 Da PI: 5.2455 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l d++ ++G g W+ +++ g++R++k+c++rw++yl Aradu.T3IMA 14 RGAWTAQEDKILRDYISLHGQGKWRNLPQRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.7e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ Aradu.T3IMA 67 RGNISEDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7899******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.871 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.44E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.83E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.992 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-24 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.26E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MGRSPCCSKE GLNRGAWTAQ EDKILRDYIS LHGQGKWRNL PQRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SEDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKRVRDLQ 120 TISSASSQQP NETNNNIQKP TTMPPTTNKV VSTTTPSLSP LNDSHSLLVR TKASKCSKSL 180 FLDHSSTTTT SLQQNKTSSN NNNDNSHELD ETAADHVLLP PPGLLLPSNG DNNNTMVMMM 240 MEMGTNSEEY KEISTTELLL DFDVGDICLH SLLNSDFEDI CDFGYNNSNS NCEDLFGFSP 300 PEQMQLDSSD EVLKEATVPS NFPDETNNIV QNIQFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.T3IMA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015954738.1 | 0.0 | transcription factor MYB8-like | ||||
Swissprot | P10290 | 1e-62 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A445DWC6 | 0.0 | A0A445DWC6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA13G16890.1 | 9e-99 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 4e-64 | MYB family protein |