PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.T39L1

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bHLH

Protein Properties

Length: 364aa MW: 40014.7 Da PI: 8.0286

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.T39L1	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14	9.5e-05	322	341	36	55
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 + s a++L +Av+YIk Lq Aradu.T39L1 322 RQTSTADMLDLAVDYIKGLQ 341 4499***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	0.00103	316	345	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.4E-5	321	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.32E-5	321	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MDSNNINSGL LRYRSAPSSI LTSLMDNIHH GGGGGGNEEA LRTELEKLIS SNNKSKHVNN 60 SSEHLKREEG NNNYNYSFGS QNHVIYQNNQ HYHQIHQGLA MASSCNNGFD GTFFGATNSV 120 DSENNNDNGT QHKMGSNLIR QKSSPAGFFS NYSIDNNGTT TSSRSNSGLQ CTLNFSSRSS 180 SCSKSRMPQI VESGNEGMES NCVENRNLII RSDDSNNNNN NNGSTKCYMP RFTGDVWDAS 240 EFNSSKRGTN NGEIMFSTSN AMEAQDVDFG YQKVGLTHHL SLPSSSTKIG GMEKLFQIQG 300 SAPCKIRAKR GFATHPRSIA ERQTSTADML DLAVDYIKGL QKQVKILTDT RAKCNCSSNY 360 QKEQ

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MDSNNINSGL LRYRSAPSSI LTSLMDNIHH GGGGGGNEEA LRTELEKLIS SNNKSKHVNN  60
SSEHLKREEG NNNYNYSFGS QNHVIYQNNQ HYHQIHQGLA MASSCNNGFD GTFFGATNSV  120
DSENNNDNGT QHKMGSNLIR QKSSPAGFFS NYSIDNNGTT TSSRSNSGLQ CTLNFSSRSS  180
SCSKSRMPQI VESGNEGMES NCVENRNLII RSDDSNNNNN NNGSTKCYMP RFTGDVWDAS  240
EFNSSKRGTN NGEIMFSTSN AMEAQDVDFG YQKVGLTHHL SLPSSSTKIG GMEKLFQIQG  300
SAPCKIRAKR GFATHPRSIA ERQTSTADML DLAVDYIKGL QKQVKILTDT RAKCNCSSNY  360
QKEQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.T39L1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015937350.1	0.0	transcription factor bHLH130
TrEMBL	A0A444XYQ5	0.0	A0A444XYQ5_ARAHY; Uncharacterized protein
STRING	GLYMA13G27455.1	1e-116	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-23	bHLH family protein