PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.SJ3NX
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRF
Protein Properties Length: 436aa    MW: 49907.9 Da    PI: 7.858
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.SJ3NXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.41.4e-24119163145
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                  d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e+
  Aradu.SJ3NX 119 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEQ 163
                  79****************************************997 PP
2QLQ57.83.4e-202257237
          QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i++
  Aradu.SJ3NX 22 PFTPSQWQELEHQALIYKYMASGISIPPDLLFSIKR 57
                 8*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.6E-122157IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.6972257IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-142255IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.918119163IPR014977WRC domain
PfamPF088791.6E-20120162IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MQVARKNDLM MNGGSSRSSR FPFTPSQWQE LEHQALIYKY MASGISIPPD LLFSIKRGYH  60
LDHSRLFPHH HPPQHREYLL FVFLIYVYVH ELVQVITYKY AMHAVGWNYL QMGLGRKIDP  120
EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSRKP VEQQQPLKQS PAAAPTNTDD  180
AAASSHHAPS SSTTTTILSI TNNNNSLSPL SSASLSSHHD LYHQHQHQHS FLYHHQPSSR  240
SSNSIGFSFQ DNNAAPLFLD TQTNTDCRER YIYGLKEEVD EHAFFTEPSG TMRSFSASSM  300
DDSWQLTPLT ISSSTSSKQR SCSGLSNENN NEYSYLQLHH HSFNADHNNN NSKQREAEQD  360
HHQQGGGCYM ALGKEEEPHH QKTTVHRFFD EWPHKSRGGS SWLDLDDKSS TTQLSISIPT  420
SSHDFTTFTS RNTRDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.SJ3NX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098467e-51AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
GenBankAP0150357e-51AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020998875.10.0growth-regulating factor 1 isoform X1
RefseqXP_020998879.10.0growth-regulating factor 1 isoform X1
TrEMBLA0A445EPJ90.0A0A445EPJ9_ARAHY; Uncharacterized protein
STRINGGLYMA13G16924.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-44growth-regulating factor 5