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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.S821T | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 206aa MW: 23644.1 Da PI: 9.9311 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.4 | 1.1e-19 | 16 | 62 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 kr+e + +r+vtfskR+ g++ K ELS+LC+ae a+ii s++gkly Aradu.S821T 16 KRVEQSNKRHVTFSKRKLGLFNKVTELSILCQAETALIISSQNGKLY 62 7899******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.1E-24 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.128 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-21 | 9 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-18 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-18 | 17 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-18 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-18 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MVSSQATTRR RKIEIKRVEQ SNKRHVTFSK RKLGLFNKVT ELSILCQAET ALIISSQNGK 60 LYACGYPSPD AVIWRFLYGG DSSPPQRNDV RFLKKKQKEN VEVQRAQYES AHEALKEEKK 120 RLDKTKKERN SDNNGGCLGF SRWWENPIDD MDLEELVKFK ESLEQLKTNL IAATDNKINM 180 FQQMMMPSPV AAPSSLIMAP MQTSLE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.S821T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020981643.1 | 1e-150 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A445AGC6 | 1e-137 | A0A445AGC6_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA07G05001.1 | 1e-60 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13227 | 10 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-19 | AGAMOUS-like 62 |