PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.S2CLB
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 504aa    MW: 59017.7 Da    PI: 7.309
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.S2CLBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.62.1e-2373164190
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  +fYn YAk+ GFs rks+ +++ +n+ +t++ fvC ++g+r+  +++  ++++r+++++tr+gC  +++v+ ++ +g+w v+ +++eHnHe+ 
  Aradu.S2CLB  73 SFYNLYAKMNGFSARKSQIRRNVNND-VTQQAFVCFRQGFRDLCSDNdaARRKREPKPTTRCGCGTEMRVHIHEeTGRWIVSYFQEEHNHEML 164
                  5********************96655.**************9988886678888899**************9999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.8E-2173164IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.287314350IPR007527Zinc finger, SWIM-type
SMARTSM005750.0018325352IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MNVLHDLDPQ ERTLEDVSDC VSDSDEYFGD NFYDDWDNRA INGIADLQTV KFKELTADQI  60
RRLPFPDRSV AFSFYNLYAK MNGFSARKSQ IRRNVNNDVT QQAFVCFRQG FRDLCSDNDA  120
ARRKREPKPT TRCGCGTEMR VHIHEETGRW IVSYFQEEHN HEMLDDMLTF MLPGHRKMNS  180
AAIDQMNMML KVGIKTPQIY SSFVHTAGRF HNVPFLKIDM HNLRDFVEQF FRCISQMRSR  240
EAQSDLQSIV GDLVLQSPLH DLERSAANML TREIFLLFRP MLSRACTLKI RSCTYTPTFE  300
IYTLSRSGSL HKEWRVSHYP NEEIYKCSCM RMESLGIPCD HVVAVLVHLD ATKLPKSLIL  360
DRWSKNARSR VHAFMDNGPF CWDSMYFLRN KKQCMQADKE RTEPHAESTT LEGCIRNPLM  420
LRHSKRQRRG SMSHSSLQRR RHGHRRYSNA LEENIHHVES PQDDCYRPDW TDVEYTSFFW  480
DGDGGSDNFD MEIPVSNPYY SSQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415428RNPLMLRHSKRQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.S2CLB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020987625.11e-163protein FAR1-RELATED SEQUENCE 9-like
TrEMBLA0A445E1N80.0A0A445E1N8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-18FAR1-related sequence 5