PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RYS1S
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 461aa    MW: 51738.8 Da    PI: 6.4528
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RYS1SgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.83.5e-130914601373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+a+s+++++  ++l+ + +  +s +g+p+qRl ay++e+L ar  +s++++y+al++++ +    +e l+++++++e++P++kf++++a
  Aradu.RYS1S  91 LKQLLILCAKAMSENKMKDFDQLIDKARSAVSISGEPIQRLGAYLVEGLVARKEKSGNNIYHALRCKQPA---GTELLSYMQMLYEICPYFKFGYMAA 185
                  679******************************************************************9...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aI ea  +e+r+HiiDf+i qG+QW +LlqaLa+Rp+g+p++RiTg+++p s+  + eele++ge L+k+ +++++++ef+  +     d++ ++L
  Aradu.RYS1S 186 NGAIAEACRNEDRIHIIDFQIAQGTQWTTLLQALAARPSGAPHVRITGIDDPVSKyaRGEELEAVGESLSKISKKFDIEVEFHG-IPVFAPDVTRDML 282
                  ****************************************************999999**************************.5888999****** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +v+pgEalaVn+ lqlh++ desv+++++rde+L+lvkslsPkv ++veqe+++n++ F++rf+e+l+yy a+f+s+++ lpr+s+eri+vE+++l+r
  Aradu.RYS1S 283 DVRPGEALAVNFPLQLHHTADESVDVTNPRDELLRLVKSLSPKVTTLVEQESNTNTTHFFNRFIETLDYYLAMFESIDVALPRTSKERINVEQHCLAR 380
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +ivn+v+ceg+er+erhe ++kWr+r+++aGF ++pls+++++ ++ ll++++++ y++ e++g+++l Wk+r+L+s+SaW
  Aradu.RYS1S 381 DIVNIVSCEGKERVERHELFGKWRSRFTMAGFVQYPLSSYVNSIIRNLLNRYSEN-YSLVEKDGAMLLAWKNRNLISASAW 460
                  *****************************************************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.84565442IPR005202Transcription factor GRAS
PfamPF035141.2E-12791460IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MDSSHLLGYS VTNSSLLSKS SFPTTPPLSH LLLGPLNEAV NSPNLSLSTH FNSDTDSALN  60
DSQQLVEVTR AEKRHKSMEE ASLQSIPSST LKQLLILCAK AMSENKMKDF DQLIDKARSA  120
VSISGEPIQR LGAYLVEGLV ARKEKSGNNI YHALRCKQPA GTELLSYMQM LYEICPYFKF  180
GYMAANGAIA EACRNEDRIH IIDFQIAQGT QWTTLLQALA ARPSGAPHVR ITGIDDPVSK  240
YARGEELEAV GESLSKISKK FDIEVEFHGI PVFAPDVTRD MLDVRPGEAL AVNFPLQLHH  300
TADESVDVTN PRDELLRLVK SLSPKVTTLV EQESNTNTTH FFNRFIETLD YYLAMFESID  360
VALPRTSKER INVEQHCLAR DIVNIVSCEG KERVERHELF GKWRSRFTMA GFVQYPLSSY  420
VNSIIRNLLN RYSENYSLVE KDGAMLLAWK NRNLISASAW Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-65884601374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.RYS1S
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015953896.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A445DZ640.0A0A445DZ64_ARAHY; Uncharacterized protein
STRINGGLYMA06G41500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-176GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]