PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RUB4J
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 495aa    MW: 57562.6 Da    PI: 9.1995
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RUB4JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR181.11.9e-2569158290
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  fYn+Y++  GF  r+ k+ ++ + gei+++tfvC+++g+re++  +  +++r+++++tr+gC a++++k+++ +g+w+v+++++eHnH la
  Aradu.RUB4J  69 FYNNYSRLKGFASRRGKTVRN-TAGEIVRYTFVCNRQGFREKKWLEkVDRKREHKVVTRCGCMAEMRIKRKEgSGRWYVSRFVEEHNHVLA 158
                  9****************9998.8888***************997664678888999********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.8E-2369157IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.742296329IPR007527Zinc finger, SWIM-type
SMARTSM005750.005304331IPR006564Zinc finger, PMZ-type
PfamPF044340.0012305326IPR007527Zinc finger, SWIM-type
SuperFamilySSF577563.77E-6433471IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.631452469IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDWHEHVVVA KHYDDWDTMY DTRVEEDAEL SDWEGRGASM LPVFFGLDGL RDEDVLEMEF  60
SSPEEASGFY NNYSRLKGFA SRRGKTVRNT AGEIVRYTFV CNRQGFREKK WLEKVDRKRE  120
HKVVTRCGCM AEMRIKRKEG SGRWYVSRFV EEHNHVLAYG KLVDYLRSHR KISEVEVAQL  180
TSMREIGISI PKIYESFAAQ LGGFNLVTFT KCVDFLRDTE DELDFRSWYG TPVLQTEFIE  240
LEKSGWTRFT REMFLRYRDS LKRCVRVRIY EFNDSENPHA YTLQKYRRPE MNWKVYRDHI  300
SNRFSCTCMR MESFGIPCVH ILSVCVRLDL VEIPESLVLR RWSKASKLEI HNQCGEQHTA  360
DPSVTYRTRL GAFSQLCKRL GRVACMSDED FKLYSDKVMS DALFLEIKYG LRPSTDDMTT  420
ANDCEVKDPI RVRTKGTGRM SQAGGSASKT KRKCSTCGKL GHRKTICPNG GAQASTRNKE  480
SHAGRNKRKR SKVTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258263DSLKRC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.RUB4J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020999542.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444ZXD50.0A0A444ZXD5_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11042217
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-22FAR1-related sequence 5