PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RJ0UE
Organism
Arachis duranensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 343aa    MW: 39000.1 Da    PI: 6.74
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RJ0UEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-152976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l ++    G g+W+ Iar  g+ R++k+c++rw +yl
      Aradu.RJ0UE 29 KGLWSPEEDDKLMNYMMNNGQGCWSDIARNAGLQRCGKSCRLRWINYL 76
                     678*******************************************97 PP
2Myb_DNA-binding47.34.7e-1582125146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++++ E++l+++ + +lG++ W+ Ia++++ gRt++++k++w++
      Aradu.RJ0UE  82 RGAFSPHEQQLIIHFHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 125
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-242279IPR009057Homeodomain-like
PROSITE profilePS5129416.6212476IPR017930Myb domain
SuperFamilySSF466897.03E-2827123IPR009057Homeodomain-like
SMARTSM007177.5E-112878IPR001005SANT/Myb domain
PfamPF002494.4E-142976IPR001005SANT/Myb domain
CDDcd001673.06E-93276No hitNo description
PROSITE profilePS5129423.82377131IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-2580132IPR009057Homeodomain-like
SMARTSM007171.8E-1481129IPR001005SANT/Myb domain
PfamPF002491.6E-1382125IPR001005SANT/Myb domain
CDDcd001675.53E-1084124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MMITFQGRRR RMRKPSEQSS SSKNNKLRKG LWSPEEDDKL MNYMMNNGQG CWSDIARNAG  60
LQRCGKSCRL RWINYLRPDL KRGAFSPHEQ QLIIHFHSLL GNRWSQIAAR LPGRTDNEIK  120
NFWNSTIKKR LKQQQQQSTT SPNASDDHDY SSYDPNNNNK DLNIVGGGEG LNSNSTTQQF  180
HQHHLHFMPL VFNSSSSSSS SSMQNTVLNT IIDRLPMLDH GLNIPPANGF NNKGFYDLEN  240
GVIGGVDNNN NNINNLGAEE VVVGDNTYTN TNTFSDHDNN NLKVLESACI NNNTNYFDDI  300
NNKIMKGGVV ENLFHEELTL GEWDLEEFMK DVTSFPFLAD FSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-262413122128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAradu.RJ0UE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015952593.10.0transcription factor MYB61-like
RefseqXP_025686251.10.0transcription factor MYB83
TrEMBLA0A445E4230.0A0A445E423_ARAHY; Uncharacterized protein
STRINGXP_007132019.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.14e-70myb domain protein 46