PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.RFN6Q | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HSF | ||||||||
Protein Properties | Length: 656aa MW: 73682.3 Da PI: 6.9532 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.2 | 1.5e-34 | 197 | 288 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl k+y++++d+++++++sw+ +++nsfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F k++k+ll++i Aradu.RFN6Q 197 FLLKTYDMVDDSATDDIVSWNsSTNNSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFHKIHPER---------WEFANDDFMKDQKHLLKNI 284 9********************8889*****************************************999.........******************* PP XXXX CS HSF_DNA-bind 98 krkk 101 +r+k Aradu.RFN6Q 285 HRRK 288 **98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF81383 | 1.96E-8 | 111 | 167 | IPR001810 | F-box domain |
Gene3D | G3DSA:1.20.1280.50 | 1.2E-5 | 119 | 166 | No hit | No description |
SMART | SM00415 | 1.5E-57 | 193 | 287 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.6E-36 | 193 | 287 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.8E-34 | 193 | 287 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.5E-29 | 197 | 287 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.0E-18 | 197 | 220 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.0E-18 | 236 | 248 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 237 | 261 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 8.0E-18 | 249 | 261 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
RAATTHQPPS QTHHPNSQGG RRTLLLIVSA VIDRGKVCSA LFSSFVSSLP LHEGPRRARG 60 VAVGGSVGGR LFKLSVSPSS FRVRALSQLS LSELTSFLRR RRHFLPRRGW IGPSTVFHVP 120 TELKMMILEC LPSVVVARVT CLCSELRYLS GNNDLWKKKF EEEFGEAGRE DFLEGSGMEG 180 GAPQSTGGGA GGGPAPFLLK TYDMVDDSAT DDIVSWNSST NNSFVVWNPP EFARLLLPTY 240 FKHNNFSSFI RQLNTYGFHK IHPERWEFAN DDFMKDQKHL LKNIHRRKPI HSHSHPPGSV 300 VDPERAAFEE EIEKLNREKS SIESNIFSFK QHQSTAKLHL EEFQQRLDGM EKRQKHLLNI 360 FEKALQNPTF VEQFSRKIES MDLSAYNKKR RLPQVDDMQP VVESSFVDNP NNFRMEFGNV 420 FHQDFSNKLR LELSPAVSDM NLVSRSTQSS NEDGESPQKK ISEGEQTGTQ TRTSVPFAPE 480 TLELADTGAS FTFKMDSCLS QRATNSESPK LCTLEPSSEE GDSHISCQLT LASCPFKVNR 540 NPYSAKASQI DSQEIGKLAE PRFHSNSKES DSGVFSNRNQ ANDATNLASS LETPSNNQVT 600 QPNRVNDVFW EQFLTERPGC SDNEEAISNY RGNPCDEQDE GRLNARNVKN MDQLTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 6e-20 | 175 | 287 | 4 | 129 | Heat shock factor protein 1 |
5d5v_B | 6e-20 | 175 | 287 | 4 | 129 | Heat shock factor protein 1 |
5d5v_D | 6e-20 | 175 | 287 | 4 | 129 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.RFN6Q |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015941271.1 | 0.0 | heat stress transcription factor A-5 | ||||
Refseq | XP_025620021.1 | 0.0 | heat stress transcription factor A-5 | ||||
Swissprot | Q94BZ5 | 1e-159 | HSFA5_ARATH; Heat stress transcription factor A-5 | ||||
TrEMBL | A0A445AB17 | 0.0 | A0A445AB17_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA05G28460.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4961 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13980.1 | 1e-162 | HSF family protein |
Publications ? help Back to Top | |||
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