PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aradu.RB14Z

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB_related

Protein Properties

Length: 358aa MW: 39576.5 Da PI: 10.1453

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.RB14Z	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Aradu.RB14Z 60 RERWTDEEHKKFLEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 104 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.22E-17	54	107	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.187	55	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-9	56	107	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.2E-16	58	107	IPR006447	Myb domain, plants
SMART	SM00717	5.3E-13	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-14	60	103	IPR001005	SANT/Myb domain
CDD	cd00167	2.32E-10	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MAIHDQNRVT TSQGSPPVGN EVSSGSELHS VTDIQLKDQF STTNDGALKV RKPYTIKKQR 60 ERWTDEEHKK FLEALKLHGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVLR DSSGKIINSA 120 ESIEIPPPRP KRKPMHPYPR KLVGTPNKIT SVKEQPNRSN SLKSQADFDQ ENQSPKSVLT 180 GVGSDSHGSS DSDTPNGSLS PMSSVSGVNS SGFTLVEPKT PSEEAGLNAD SAHNENPLVI 240 SKKEIKASMV EESFGQTVKL FGMTLSVTNT CRPSPSSIEA CKPIPVHINV HCFGKGEGKS 300 ELPSHIVPSE TRATSKLRPR MRTETCGRGF VPYKRFMAER EKNHSSTDRE EQGFRLSL

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MAIHDQNRVT TSQGSPPVGN EVSSGSELHS VTDIQLKDQF STTNDGALKV RKPYTIKKQR  60
ERWTDEEHKK FLEALKLHGR AWRRIEEHVG TKTAVQIRSH AQKFFSKVLR DSSGKIINSA  120
ESIEIPPPRP KRKPMHPYPR KLVGTPNKIT SVKEQPNRSN SLKSQADFDQ ENQSPKSVLT  180
GVGSDSHGSS DSDTPNGSLS PMSSVSGVNS SGFTLVEPKT PSEEAGLNAD SAHNENPLVI  240
SKKEIKASMV EESFGQTVKL FGMTLSVTNT CRPSPSSIEA CKPIPVHINV HCFGKGEGKS  300
ELPSHIVPSE TRATSKLRPR MRTETCGRGF VPYKRFMAER EKNHSSTDRE EQGFRLSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.RB14Z

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015956697.1	0.0	protein REVEILLE 2
TrEMBL	A0A445DQ96	0.0	A0A445DQ96_ARAHY; Uncharacterized protein
STRING	GLYMA18G05050.1	1e-142	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2956	33	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-40	MYB_related family protein