PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.R8RBF

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 528aa MW: 61308.1 Da PI: 9.1522

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.R8RBF	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	39	2.7e-12	81	161	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++k+ g+ +k+++ gk +++ + +++t+++ r++C a++ ++ k g w ++k++ +H+H+++p Aradu.R8RBF 81 KFYKDYAKAIGFSTRVRSTNKK---GNKIKNQL-----GKWKSKISP---TEKTNPTARVNCPARIYIHTLKdVGAWIISKVVMHHSHSCCP 161 6**************98887...43455544.....555555444...67789*********998879************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-9	81	161	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MDDSISDCQL NQDKVDFEFE SNEVPDTLGC RSELFGCIFR EKFYSIFLFL TCCILQPLSV 60 VDKQLVPKDG MTFKNLNDAV KFYKDYAKAI GFSTRVRSTN KKGNKIKNQL GKWKSKISPT 120 EKTNPTARVN CPARIYIHTL KDVGAWIISK VVMHHSHSCC PTQAEMLKQH RELSMSVRRT 180 IENNEEADLY EDRHIWVPIY LDHHFWAGMR STQRSESMHS IFNKFTTWNS LLIQFVKQYD 240 NCLGSREQAE RKSDAADFYT VIPCATKSSI EAQFQDVYTH QKFRKVQVQF REKVNCITRL 300 MNSALGYSVY EVGDQVFRSI FNKFVVTYDS VAAEVKYQCL LFESRGILCR HALSVLSFER 360 VSQVSSRYIL ERWSKKSSHD EPLLEPRSKR FDELVFRSQN IYDFASELEE LTAILHHAYN 420 KVMVEMEELK AKRKGTCSLS HEDANLESIN ELQSHPRIRT RGRPKNRLGS KLDKQIANSL 480 KKKKTKDLNE LNLFDAASVV HPNFSQYQGR VMNYQFRKPV AVDSFLGV

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MDDSISDCQL NQDKVDFEFE SNEVPDTLGC RSELFGCIFR EKFYSIFLFL TCCILQPLSV  60
VDKQLVPKDG MTFKNLNDAV KFYKDYAKAI GFSTRVRSTN KKGNKIKNQL GKWKSKISPT  120
EKTNPTARVN CPARIYIHTL KDVGAWIISK VVMHHSHSCC PTQAEMLKQH RELSMSVRRT  180
IENNEEADLY EDRHIWVPIY LDHHFWAGMR STQRSESMHS IFNKFTTWNS LLIQFVKQYD  240
NCLGSREQAE RKSDAADFYT VIPCATKSSI EAQFQDVYTH QKFRKVQVQF REKVNCITRL  300
MNSALGYSVY EVGDQVFRSI FNKFVVTYDS VAAEVKYQCL LFESRGILCR HALSVLSFER  360
VSQVSSRYIL ERWSKKSSHD EPLLEPRSKR FDELVFRSQN IYDFASELEE LTAILHHAYN  420
KVMVEMEELK AKRKGTCSLS HEDANLESIN ELQSHPRIRT RGRPKNRLGS KLDKQIANSL  480
KKKKTKDLNE LNLFDAASVV HPNFSQYQGR VMNYQFRKPV AVDSFLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.R8RBF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-30	far-red elongated hypocotyls 3