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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.R83G6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 466aa MW: 51671.4 Da PI: 8.0225 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.8 | 4.6e-33 | 194 | 250 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geHnh+k Aradu.R83G6 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGQIAEIVYKGEHNHPK 250 9***************************************.***************85 PP | |||||||
2 | WRKY | 103 | 1.7e-32 | 384 | 441 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+vkg+++prsYYrCt +C+v+k+ver+ +dp+++++tYeg+Hnhe Aradu.R83G6 384 GDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCNVRKHVERAIDDPRAFVTTYEGKHNHE 441 59*******************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-29 | 183 | 251 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.94E-26 | 191 | 251 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-37 | 192 | 250 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.122 | 194 | 251 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 194 | 249 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.7E-33 | 369 | 443 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.222 | 378 | 443 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.75E-28 | 378 | 443 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.3E-38 | 383 | 442 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-25 | 385 | 441 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MDIDEAERVV VAKPVASRPN CSTFRSFSEL LAGAINASSP QIESSQATVS AIRPKTVRFK 60 PALNRTPTAS VASQDDIFEA ALCDSSHKSP NSDTKQSLIY KPMAKLVSRT TVSLLANMGN 120 CRTIQQQSGQ SMEGGLHHIS HESFGTNLSS DLYHSHSITP PSETTEPCKM MQQNIEEDQK 180 ALTSAINCDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSFDGQIAEI 240 VYKGEHNHPK PQPPKRSGTA GMQGSGMVPD GVPQDVWSNN HSERNDSRIE NQNDTGLPAN 300 SVYGVKVSQP NDSILNACGI SPENSCGLSG ECEQGSKGFE AEEEESRSKR RRNESRSNEA 360 AVSEEALIEP RIVLQSSTDS EIIGDGFRWR KYGQKVVKGN PYPRSYYRCT NVKCNVRKHV 420 ERAIDDPRAF VTTYEGKHNH EMPIKNINPN VPSERDSQAS LSKDKP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-31 | 194 | 443 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-31 | 194 | 443 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.R83G6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015970013.1 | 0.0 | WRKY transcription factor 44 | ||||
Refseq | XP_015970015.1 | 0.0 | WRKY transcription factor 44 | ||||
TrEMBL | A0A445CJ04 | 0.0 | A0A445CJ04_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA19G36100.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6790 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 3e-95 | WRKY family protein |