PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aradu.R4XLV

Organism

Arachis duranensis

Taxonomic ID

130453

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 575aa MW: 65395.3 Da PI: 7.1256

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.R4XLV	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.4	2.3e-18	71	161	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 ++Yne+++ +G +v+ ++k +gei+++ fvCs+eg+r+ ++ + +++++ +r+ r+gC+a++kv+ ++ +g+w v+++ +HnH++ Aradu.R4XLV 71 DYYNEFSRILGQEVQGGPQNKAGAEGEIIWQIFVCSREGERDGKHMHrEDRKKDPRPIMRCGCEARIKVHADDaSGRWFVEQICDNHNHPM 161 59*************************************99988846677789**************9*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-16	71	162	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.123	349	393	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence Send to blast
MQDADGGMSS ETVSVEEAEA MESSAADADI DVEAAVRIVD GIGSFGAIEF SSLTAKDVLT 60 TEFTSLQAAY DYYNEFSRIL GQEVQGGPQN KAGAEGEIIW QIFVCSREGE RDGKHMHRED 120 RKKDPRPIMR CGCEARIKVH ADDASGRWFV EQICDNHNHP MLDARFRGLS QSQRAIKEGD 180 LHQINSMRKA GLRVPTIFGA FANQSGGFET VGVADHGLED HPWIVDMYAK KHSWSNAHIW 240 GKFFAGLKTT SRCEALNMQL GKFIHNGYNL REFVEHFQHY LEFMRRRELV ADYKSAYGEP 300 IVKTKLEAIE QFAATIYIRE VFELFREVLM LASNVRVVST KRTSACVLFE VAMYCKQRSW 360 AAEEDDEFRC SCQRMEFFGL PYVHMVGVLV YLNMTAIPKG LILDRWTKRA KQPRAPCDGT 420 RVGEIPDAAY MIMHAAMLDD CRELVSLSCR FFEDYVDVKT RLAKERQSLR DKHRQRLGVA 480 EEASRVSVRD PMRARYKGCG RRVVTSWEKF HRVQRCRLCG KGRHNSRKCQ QSSTEENIDS 540 FEAGAAYESM EVGKGVRSTM NLSELAEPFL LVVTH

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence Send to blast

MQDADGGMSS ETVSVEEAEA MESSAADADI DVEAAVRIVD GIGSFGAIEF SSLTAKDVLT  60
TEFTSLQAAY DYYNEFSRIL GQEVQGGPQN KAGAEGEIIW QIFVCSREGE RDGKHMHRED  120
RKKDPRPIMR CGCEARIKVH ADDASGRWFV EQICDNHNHP MLDARFRGLS QSQRAIKEGD  180
LHQINSMRKA GLRVPTIFGA FANQSGGFET VGVADHGLED HPWIVDMYAK KHSWSNAHIW  240
GKFFAGLKTT SRCEALNMQL GKFIHNGYNL REFVEHFQHY LEFMRRRELV ADYKSAYGEP  300
IVKTKLEAIE QFAATIYIRE VFELFREVLM LASNVRVVST KRTSACVLFE VAMYCKQRSW  360
AAEEDDEFRC SCQRMEFFGL PYVHMVGVLV YLNMTAIPKG LILDRWTKRA KQPRAPCDGT  420
RVGEIPDAAY MIMHAAMLDD CRELVSLSCR FFEDYVDVKT RLAKERQSLR DKHRQRLGVA  480
EEASRVSVRD PMRARYKGCG RRVVTSWEKF HRVQRCRLCG KGRHNSRKCQ QSSTEENIDS  540
FEAGAAYESM EVGKGVRSTM NLSELAEPFL LVVTH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.R4XLV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015934909.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445APE8	0.0	A0A445APE8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13819	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-22	FAR1-related sequence 5