PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NF-YC

Protein Properties

Length: 306aa MW: 33795.5 Da PI: 6.1522

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aradu.QXB0J	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	61.5	1.7e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki+++dedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl div + Aradu.QXB0J 6 DTRFPAARIKKIMQTDEDVGKIALAVPVLVSKALELFLQDLCNRTYSITLQRGAKTMTSLHLKHCVQSYNVFDFLRDIVSK 86 5789**************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.3E-26	2	72	IPR009072	Histone-fold
SuperFamily	SSF47113	2.0E-20	3	90	IPR009072	Histone-fold
Pfam	PF00808	1.4E-18	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MKKKLDTRFP AARIKKIMQT DEDVGKIALA VPVLVSKALE LFLQDLCNRT YSITLQRGAK 60 TMTSLHLKHC VQSYNVFDFL RDIVSKVPDY GHGHGHGHSH SEGGVDDRTL PKRRKAGGDD 120 CNDSDEEAKR SKMYELGHSG GTGRGRGRGR GRGRGRGART AEREAHHHQQ VESEPCSSVQ 180 HPSKDIPNTG MSLDNSPESK EVPKENTACH EENNQSLRNI DLNANLNESE EKNTSMEAPA 240 SLPPATLPPS SLPELATEIN HEEIPGWSLS DADKMAIDTM QLANLGSRID DDEDYDEEGR 300 ISLWGI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-22	2	72	5	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	155	RGRGRGRGRGR
2	147	156	RGRGRGRGRG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Aradu.QXB0J

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015946986.1	0.0	dr1-associated corepressor homolog
Refseq	XP_025624793.1	0.0	dr1-associated corepressor homolog
TrEMBL	A0A445B1F5	0.0	A0A445B1F5_ARAHY; Uncharacterized protein
STRING	GLYMA06G46850.1	1e-133	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1728	34	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-67	nuclear factor Y, subunit C11