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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Aradu.QK1RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
| Family |
C2H2 |
| Protein Properties |
Length: 252aa MW: 30046.6 Da PI: 10.253 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aradu.QK1RA | genome | NCGR_PGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 17.9 | 8.4e-06 | 28 | 50 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
Aradu.QK1RA 28 FTCEICNKGFQRDQNLQLHKRGH 50
89******************988 PP
|
| 2 | zf-C2H2 | 13.9 | 0.00016 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H +t+
Aradu.QK1RA 88 WKCEKCSKKYAVQSDWKAHSKTC 110
58*****************9998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 252 aa
Download sequence Send
to blast |
MFFLLICSDP YVEVIALSPK SLLATNRFTC EICNKGFQRD QNLQLHKRGH NLPWKLKQRT 60
SKEIRKKVYM CPKPSCVHHD LKHGEKKWKC EKCSKKYAVQ SDWKAHSKTC GTREYICDCG 120
TLFLRLHSPQ RKTMAKKRER HNELLHRKLF MPPETTNLFN DKNSYRKLSE IVDQAKRRAE 180
VVRLRELHTL NYSNGISFSF RKDPSFKPQG GQLRENDMDY DTDENSMATL RRHLRGATEE 240
YYRYKRWRDI GQ
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 54 | 66 | KLKQRTSKEIRKK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}. |
